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jalview.git
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3775 Re-compiled Getdown jars commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Help documentation updated commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 pass getdown proxy settings in proxy.txt on... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3676 More explicit tooltip about resetting log... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3676 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3676 code review -- added non-listed Level into... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 Even more Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 More Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used. commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... commit | commitdiff | tree | snapshot
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 removed debugging prints commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... commit | commitdiff | tree | snapshot
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7 commit | commitdiff | tree | snapshot
2020-10-29 Ben SoaresJAL-3248 Added mention of version 'TEST' in shadow... commit | commitdiff | tree | snapshot
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corre... commit | commitdiff | tree | snapshot
2020-10-28 Jim ProcterJAL-3760 fix tests for changed behaviour commit | commitdiff | tree | snapshot
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... commit | commitdiff | tree | snapshot
2020-10-28 Jim ProcterMerge branch 'portforward/JAL-3765_patch_to_2112' into... commit | commitdiff | tree | snapshot
2020-10-28 Jim ProcterJAL-3765 fix test commit | commitdiff | tree | snapshot
2020-10-28 Jim Procterfix for JAL-3765 commit | commitdiff | tree | snapshot
2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before... commit | commitdiff | tree | snapshot
2020-10-15 Ben SoaresMerge branch 'develop' into blocker/JAL-3611_space_char... commit | commitdiff | tree | snapshot
2020-09-28 Ben SoaresJAL-3753 ensure correct dependencies for shadowJar... commit | commitdiff | tree | snapshot
2020-09-28 Ben SoaresMerge branch 'develop' into bug/JAL-3753_resources_dupl... commit | commitdiff | tree | snapshot
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle... commit | commitdiff | tree | snapshot
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope... commit | commitdiff | tree | snapshot
2020-09-23 Ben SoaresMerge branch 'develop' into bug/JAL-3753_resources_dupl... commit | commitdiff | tree | snapshot
2020-09-23 Ben SoaresJAL-3477 Added 10k leeway to amount of memory reserved... commit | commitdiff | tree | snapshot
2020-09-23 Ben SoaresJAL-3753 Resources seen in tests and appropriate filter... commit | commitdiff | tree | snapshot
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop... commit | commitdiff | tree | snapshot
2020-09-20 Ben SoaresJAL-3753 put resources in gradle run and test path commit | commitdiff | tree | snapshot
2020-09-18 Ben SoaresJAL-3753 JAL-3754 first rejig commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when... commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when... commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop commit | commitdiff | tree | snapshot
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... commit | commitdiff | tree | snapshot
2020-09-11 Ben SoaresJAL-3679 Added externally specified plugins dir to... commit | commitdiff | tree | snapshot
2020-09-10 Jim ProcterJAL-3746 bump release version for 2.11.2 series (curren... commit | commitdiff | tree | snapshot
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands commit | commitdiff | tree | snapshot
2020-09-04 Ben SoaresJAL-3679 Added externally specified plugins dir to... feature/JAL-3615gzipXfam commit | commitdiff | tree | snapshot
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... commit | commitdiff | tree | snapshot
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key... commit | commitdiff | tree | snapshot
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... commit | commitdiff | tree | snapshot
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0 commit | commitdiff | tree | snapshot
2020-08-31 gmungocJAL-1191 use Cache.log for logging commit | commitdiff | tree | snapshot
2020-08-31 gmungocJAL-1191 reduce logging level for warnings commit | commitdiff | tree | snapshot
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0 commit | commitdiff | tree | snapshot
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test commit | commitdiff | tree | snapshot
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes commit | commitdiff | tree | snapshot
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for... commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop commit | commitdiff | tree | snapshot
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop commit | commitdiff | tree | snapshot
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report... commit | commitdiff | tree | snapshot
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... commit | commitdiff | tree | snapshot
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description... commit | commitdiff | tree | snapshot
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... commit | commitdiff | tree | snapshot
2020-08-03 Ben SoaresJAL-3477 added help documentation for executable jar... commit | commitdiff | tree | snapshot
2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop commit | commitdiff | tree | snapshot
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,... commit | commitdiff | tree | snapshot
2020-07-20 gmungocJAL-3597 slight tidying of code and Javadoc, passmark... commit | commitdiff | tree | snapshot
2020-07-14 gmungocJAL-1421 last change tidied up properly commit | commitdiff | tree | snapshot
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