jalview.git
2016-01-11 gmungocJAL-1544 "more than" not "more that"
2016-01-07 tcofoegbumerge
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS...
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on...
2015-12-03 gmungocJAL-1827 code and comment tidy up
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better
2015-12-02 gmungocJAL-1827 added overloaded method for convenience
2015-12-02 gmungocJAL-1827 reverted text on generic sequence fetcher...
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho...
2015-11-25 tcofoegbuJAL-1479 applet build debug
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS...
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference...
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi...
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS...
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous...
2015-11-11 tcofoegbumerge of SIFTs Branch
2015-11-11 tcofoegbumerge
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping
2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to...
2015-11-06 gmungocJAL-1946 unit tests (and comments) for PID() function
2015-11-06 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor
2015-10-30 Jim ProcterMerge branch 'JAL-1954_pfamformatbroke' into develop
2015-10-30 Jim ProcterJAL-1954 rejigged PFAMFile to split on ‘\t’ if no space...
2015-10-30 Jim ProcterJAL-1954 formatting
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source...
2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasVali...
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing...
2015-10-28 tcofoegbuJAL-1952 bugfix
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for...
2015-10-28 gmungocJAL-1946 additional unit test cases for PID calculation
2015-10-23 gmungocJAL-1943 don't try to unmarshal non-xml files in V1...
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more...
2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman...
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge...
2015-10-16 Jim ProcterJAL-1925 version change
2015-10-16 Jim ProcterJAL-1925 update what's new and release notes
2015-10-15 Jim ProcterJAL-1791 remove blanket sign of examples/*.jar
2015-10-15 Jim ProcterJAL-1791 id rather than name attrib
2015-10-15 Jim ProcterJAL-1791 sign the applet with/out timestamps
2015-10-15 Jim ProcterJAL-1791 add explicit proxy for benefit of jalview...
2015-10-15 Jim ProcterJAL-1791 fix ant target dependencies
2015-10-15 Jim ProcterJAL-1791 make timestamping optional using -Dtimestamp
2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp...
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp...
2015-10-15 Jim ProcterMerge branch 'bug/JAL-1923_290b2_group_annots' into...
2015-10-15 Jim ProcterJAL-1923 formatting
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify...
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice
2015-10-14 tcofoegbuJAL-1926 created interface for DBRefEntry
2015-10-14 tcofoegbuJAL-1926 added supporting model changes to enable savin...
2015-10-13 tcofoegbuJAL-1479 added SIFTS XSD and generated JAXB bindings...
2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and...
2015-10-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2015-10-08 Jim ProcterJAL-1894 add licensing
2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated
2015-10-08 Jim ProcterJAL-1894 update what's new
2015-10-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated
2015-10-08 gmungocJAL-1544 typo fix
2015-10-08 Jim ProcterJAL-1894 formatting
2015-10-08 Jim ProcterJAL-1894 organise imports
2015-10-08 tcofoegbumerge
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-10-07 Jim ProcterJAL-1894 organise imports
2015-10-07 Jim ProcterJAL-1894 update release date
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation
2015-10-07 Jim ProcterJAL-1912 formatting
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current...
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per...
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence...
2015-10-05 tcofoegbuJAL-1912 house keeping
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable...
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle...
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson...
2015-10-05 Jim ProcterJAL-1894 note about menu option bugfix JAL-1865 JAL...
2015-10-05 Jim ProcterJAL-1894 update release notes for JAL-1815 JAL-1860
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc
2015-10-05 tcofoegbumerge
2015-10-05 tcofoegbuJAL-1908 bugfix
2015-10-05 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that...
2015-10-05 tcofoegbumerge
2015-10-05 tcofoegbuJAL-1726 updated test error msg
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon...
2015-10-02 Jim ProcterJAL-1900 JAL-1625 disable iconify button for internal...
2015-10-01 Jim ProcterJAL-1894 release notes update and 6th October release...
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added...
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt...
2015-09-30 tcofoegbuhouse keeping
2015-09-30 tcofoegbuJAL-1860 house keeping
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB...
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other...
2015-09-30 tcofoegbumerge
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