jalview.git
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;...
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links
2016-11-03 kiramtJAL-2282 Updated warn.url_must_contain
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked...
2016-11-03 kiramtJAL-2281 Back out unit test update, as Mungo already...
2016-11-03 kiramtMerge remote-tracking branch 'origin/develop' into...
2016-11-03 kiramtJAL-2308 Fixed hiddenColsTest bug/JAL-2308
2016-11-03 tcofoegbuJAL-2312 unit test for bug fix - repeated mapping gener...
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from...
2016-11-03 gmungocJAL-2281 test added to show searchRefs is now not case...
2016-11-03 kiramtJAL-2281 Minor unit test addition
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 kiramtJAL-2281 Unit test updates
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 gmungocJAL-2301 table formatted, and corrected to match the...
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link...
2016-11-02 kiramtJAL-2282 Refactor applet too
2016-11-02 kiramtJAL-2282 Updated and checked messages, English and...
2016-11-02 kiramtJAL-2282 Updated help documentation
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 test updated for percentage rounded
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence...
2016-11-02 kiramtJAL-2282 Code tidy
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-11-02 kiramtJAL-2282 URLLink unit tests updated
2016-11-01 gmungocConservation now using ResidueCount; tests added
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash...
2016-11-01 gmungocJAL-98 typo in javadoc
2016-11-01 gmungocJAL-98 simplified repeat() method
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif...
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac...
2016-11-01 kiramtJAL-2282 Merge
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION...
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases...
2016-10-31 gmungocJAL-98 round when formatting dec places
2016-10-31 kiramtForce double-clicking to use sequence_id cases and...
2016-10-31 kiramtUpdated messages.
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC...
2016-10-27 gmungocJAL-2282 test assertions for 'other' dbsource spikes/geoff spikes/jpred
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association...
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop
2016-10-26 gmungocJAL-2286 modal residue check + commenting
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has...
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold...
2016-10-26 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-10-26 tcofoegbuMerge branch 'features/JAL-2284_export-biojsmsa-via...
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 gmungocJAL-2286 use constant for fixed colours
2016-10-25 gmungocJAL-98 javadoc corrected
2016-10-25 gmungocJAL-98 javadoc added
2016-10-25 gmungocJAL-98 minor fixes to / tests for annotation derivation
2016-10-25 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch_fixmaster...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-25 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-25 tcofoegbuMerge branch 'bug/JAL-2277_html-output-wrapped-mode...
2016-10-25 Jim ProcterMerge branch 'sourcepub' into releases/Release_2_10_0_B...
2016-10-25 Jim ProcterMerge branch 'sourcepub' into develop
2016-10-25 Jim ProcterJAL-2089 update What's new for 2.10.0b1
2016-10-25 tcofoegbuJAL-2277 Improvement to support html+svg export in... bug/JAL-2277_html-output-wrapped-mode
2016-10-25 gmungocJAL-98 field comments updated
2016-10-25 gmungocJAL-98 small efficiency fix + commenting
2016-10-25 gmungocJAL-98 javadoc / comments updated
2016-10-25 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' Release_2_10_0b1_sourcepub
2016-10-25 Jim ProcterMerge branch 'sourcepub' into releases/Release_2_10_0_B...
2016-10-25 Jim ProcterMerge branch 'sourcepub' into develop
2016-10-25 Jim ProcterJAL-1683 reinstate replacetoken patterns so source...
2016-10-24 Jim ProcterMerge branch 'sourcepub' into develop
2016-10-24 Jim ProcterMerge branch 'sourcepub' into releases/Release_2_10_0_B...
2016-10-24 Jim ProcterJAL-1683 replace version and year in licence header...
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 gmungocJAL-98 fixme comment removed - nothing to do
2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!)
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch Release_2_10_0b1
2016-10-24 Jim ProcterJAL-2089 bump version and release branch info
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterJAL-2089 release notes for JAL-2234
2016-10-24 Jim ProcterMerge branch 'patch/JAL-2234_renameFER1_ARATH' into...
2016-10-24 Jim ProcterJAL-2234 reordered seqs (after sequence data was reorde...
2016-10-24 Jim ProcterJAL-2234 rename seqs for linked jalview examples
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterJAL-2089 tweak release note for JAL-2283
2016-10-24 Jim ProcterJAL-2089 documented additional JAL-2272 CMD-click issue...
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2272cmdClickGroupEdit' into develop
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2283consColourEnabled' into develop
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit
2016-10-24 gmungocJAL-2283 corrected preferences settings for test bug/JAL-2283consColourEnabled
2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch
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