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jalview.git
2020-11-27 Mateusz WaronwyJAL-3690 List.copyOf() workaround commit | commitdiff | tree | snapshot
2020-11-13 Mateusz WaronwyJAL-3690 separate startup and poll code in SeqAnnotatio... commit | commitdiff | tree | snapshot
2020-11-12 Mateusz WaronwyJAL-3690 - fixed state inconsistency when restarting... commit | commitdiff | tree | snapshot
2020-11-11 Mateusz WaronwyJAL-3690 partially reworked AlignCalcManager commit | commitdiff | tree | snapshot
2020-10-26 Mateusz WaronwyJAL-3690 - introduce shutdown method that cleans up... commit | commitdiff | tree | snapshot
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcListener commit | commitdiff | tree | snapshot
2020-10-21 Mateusz WaronwyJAL-3690 Catch and notify about worker cancellation... commit | commitdiff | tree | snapshot
2020-10-21 Mateusz WaronwyJAL-3690 Fix concurrent modification exception when... commit | commitdiff | tree | snapshot
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcManagerI2 commit | commitdiff | tree | snapshot
2020-10-21 Mateusz WarownyJAL - 3690 AlignCalc rebuilt - FutureTask-based manager commit | commitdiff | tree | snapshot
2020-07-22 Mateusz WarownyJAL-3690 changed AWSThread to use Timer instead commit | commitdiff | tree | snapshot
2020-07-20 Mateusz WarownyJAL-3690 alternative servers menu fix commit | commitdiff | tree | snapshot
2020-07-17 Mateusz WarownyJAL-3690 restore jws1 JPred commit | commitdiff | tree | snapshot
2020-07-16 Mateusz WarownyJAL-3690 switching to CompletableFuture to allow chaining commit | commitdiff | tree | snapshot
2020-07-15 Mateusz WarownyJAL-3690 mark JalviewChangeSupport as deprecated commit | commitdiff | tree | snapshot
2020-07-15 Mateusz WarownyJAL-3690 refactoring web-services discovery commit | commitdiff | tree | snapshot
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112 commit | commitdiff | tree | snapshot
2020-07-08 Mateusz WarownyJAL-3683 retrieve job status to output stream feature/JAL-3686_slivka_client_js_update commit | commitdiff | tree | snapshot
2020-07-08 Mateusz WarownyJAL-6386 update slivka client for j2s compatibility commit | commitdiff | tree | snapshot
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into... commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs() commit | commitdiff | tree | snapshot
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3613 remove debug code committed in error commit | commitdiff | tree | snapshot
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... commit | commitdiff | tree | snapshot
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_... commit | commitdiff | tree | snapshot
2020-04-23 Jim ProcterMerge branch 'alpha/JAL-3066_Jalview_212_slivka-integra... commit | commitdiff | tree | snapshot
2020-04-22 soaresJAL-3225 save auto formatting settings in org.eclipse... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report... commit | commitdiff | tree | snapshot
2020-04-21 gmungocJAL-3210 try adding setup method to unit test failing... commit | commitdiff | tree | snapshot
2020-04-21 gmungocJAL-1889 corrected wait for consensus to be calculated commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-367 code tidy commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide commit | commitdiff | tree | snapshot
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... commit | commitdiff | tree | snapshot
2020-04-21 Ben SoaresJAL-3602 Added configuration for enforced use of UTF... commit | commitdiff | tree | snapshot
2020-04-17 gmungocJAL-3567 unit tests for linked feature tooltips commit | commitdiff | tree | snapshot
2020-04-17 BobHansonadded .gitignore paths commit | commitdiff | tree | snapshot
2020-04-16 BobHansonJAL-3587 Load Project bug commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque... commit | commitdiff | tree | snapshot
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue... commit | commitdiff | tree | snapshot
2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_f... commit | commitdiff | tree | snapshot
2020-04-14 gmungocJAL-3583 remove debug logging, Javadoc added commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 test coverage corners bug/JAL-3574filterByPOS commit | commitdiff | tree | snapshot
2020-04-13 gmungocJAL-3574 Matcher with integer/long value pattern (e... commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 change redacted commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3596 don't draw text over features if Show Text... commit | commitdiff | tree | snapshot
2020-04-12 gmungocJAL-3583 consistent last[Formatted]Tooltip, show once... commit | commitdiff | tree | snapshot
2020-04-09 BobHansonJAL-3587 save and reload project file fix commit | commitdiff | tree | snapshot
2020-04-09 Ben SoaresJAL-3588 Remove Examples folder in windows Program... commit | commitdiff | tree | snapshot
2020-04-09 Jim ProcterJAL-3577 automatically configure JALVIEW_VERSION for... testing/JAL-3577_jalviewversion_autoset_fixed commit | commitdiff | tree | snapshot
2020-04-08 BobHansonJAL-3253 SwingJS upgrade including J11 transpiler 3... commit | commitdiff | tree | snapshot
2020-04-08 BobHansonJAL-3253 merge of new SwingJS api commit | commitdiff | tree | snapshot
2020-04-07 soaresmerge from develop: the fixy bit merge/Jalview-JS_develop_with_develop_build.gradle_gradle.properties_utils_install4j commit | commitdiff | tree | snapshot
2020-04-07 soaresmerge from develop: the rest of the changes commit | commitdiff | tree | snapshot
2020-04-07 soaresmerge from develop: Most of the changes commit | commitdiff | tree | snapshot
2020-04-07 BobHansonJAL-3589 (old Platform) fix for Jalvew-JS/develop only. commit | commitdiff | tree | snapshot
2020-04-07 gmungocJAL-3210 fudge for JalviewJS to avoid IntervalStore... commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresJAL-3577 improvement to non-release DMG background... task/JAL-3577_Jalview_Test_installers commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers... commit | commitdiff | tree | snapshot
2020-04-07 Ben SoaresJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEA... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Fixed Jalview Programme Group in Windows menu... commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... commit | commitdiff | tree | snapshot
2020-04-06 Jim ProcterJAL-3407 updated release date to Thursday 9th April... commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3581 no hidden sequence marker if hidden markers... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Moved application Categories for freedesktop... commit | commitdiff | tree | snapshot
2020-04-06 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 removed debugging commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers... commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Added existing and new Application IDs for... commit | commitdiff | tree | snapshot
2020-04-06 gmungocJAL-3579 no Feature Editor if features not shown commit | commitdiff | tree | snapshot
2020-04-06 Ben SoaresJAL-3577 Changed shortName to INTERNAL_ID commit | commitdiff | tree | snapshot
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value... commit | commitdiff | tree | snapshot
2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value... commit | commitdiff | tree | snapshot
2020-04-04 Ben SoaresJAL-3577 Added DS_Store for Test release to look like... commit | commitdiff | tree | snapshot
2020-04-03 Ben SoaresJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE... commit | commitdiff | tree | snapshot
2020-04-03 Ben SoaresJAL-3577 cleaned up old DMG files. Added NON-RELEASE... commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresJAL-3577 First attempt at new folder names commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresJAL-3572 Added getdown Implementation-Version to getdow... commit | commitdiff | tree | snapshot
2020-04-02 Ben SoaresMerge branch 'improvement/JAL-3394_added_categories_to_... commit | commitdiff | tree | snapshot
2020-04-01 soaresJAL-3438 Added spotless task to use the utils/eclipse... commit | commitdiff | tree | snapshot
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