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jalview.git
2020-06-04 Ben SoaresJAL-3225 Minor change to building.md for flexmark,... commit | commitdiff | tree | snapshot
2020-06-04 Ben SoaresJAL-3225 Removed dependency on command line pandoc... commit | commitdiff | tree | snapshot
2020-06-04 gmungocJAL-1191 reduce logging level for warnings commit | commitdiff | tree | snapshot
2020-06-04 gmungocJAL-3446 post-merge unit test fixes, formatting commit | commitdiff | tree | snapshot
2020-06-03 BobHansonI see... commit | commitdiff | tree | snapshot
2020-06-03 BobHansonadds link for __j2sflags.htm to template.html commit | commitdiff | tree | snapshot
2020-06-03 BobHansonupdated template.html commit | commitdiff | tree | snapshot
2020-06-03 BobHanson_jvjmol.txt commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3664 support for new Locale(""), meaning "not actua... commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3664 support for user.home, user.dir, user commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3446 adds SIFTs JAL-3625 SiftsClient commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3446 AsyncSwingWorker upgrade commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3446 from JAL-3253 Discoverers commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider commit | commitdiff | tree | snapshot
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 JAL-3401 from JAL-3253 HoldRepaint and SeqCanv... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Jalview2XML integration... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet Desktop and Jws2Discovere... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 JAL-3401 from JAL-3253-applet AlignmentPanel... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 from JAL-3253 AppletFormatAdapter not fixed commit | commitdiff | tree | snapshot
2020-06-02 BobHansonPreferences/StructureViewer fix commit | commitdiff | tree | snapshot
2020-06-02 BobHansonthis was supposed to go on a separate branch. Didn... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 JAL-3253 JAL-3445 BSML bbb XML format reader... commit | commitdiff | tree | snapshot
2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 JAL-3253 Preferences commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3446 from JAL-3253-applet StockholmFile updated... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonhelpful hints from Ben commit | commitdiff | tree | snapshot
2020-06-02 gmungocJAL-3446 latest jmol zip from JAL-3253-applet (commit... commit | commitdiff | tree | snapshot
2020-06-02 gmungocJAL-3446 fix broken test commit | commitdiff | tree | snapshot
2020-06-02 BobHansonBob's gitignore addition commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Cache applicationProperti... commit | commitdiff | tree | snapshot
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet web page embedding commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet JalviewLite scrollTo... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet CalculationChooser commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3626 from JAL-3253-applet StructureViewer/Chooser commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet temp. Desktop instance... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet JalviewApp integration commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet AppletParams + Cache... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet ArgsParser commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet Platform JS interface... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3253-applet Preferences final static... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL-3523-applet JalviewApp and JalviewJSApi commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3262 from JAL3253-applet core_jvjmol.z.js static... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3626 Regex optimization from JAL-3253-applet; also... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonTHIRDPARTYLIBS referred to intervalstore-v1.0 still commit | commitdiff | tree | snapshot
2020-06-01 BobHansoncorrects Platform.openURL commit | commitdiff | tree | snapshot
2020-06-01 BobHansonJAL-3626 adding compatible Platform.java commit | commitdiff | tree | snapshot
2020-06-01 BobHansonSwingJS update commit | commitdiff | tree | snapshot
2020-06-01 BobHansonMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2020-06-01 BobHansonswingjs/api, javajs/async commit | commitdiff | tree | snapshot
2020-06-01 soaresJAL-3225 small fixes for building within Eclipse commit | commitdiff | tree | snapshot
2020-05-28 soaresMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2020-05-28 BobHansonJAL-3626 transpiler and SwingJS upgrade commit | commitdiff | tree | snapshot
2020-05-28 BobHansonVarna fix for hashtable.remove(value) [unclear] commit | commitdiff | tree | snapshot
2020-05-28 BobHansonJAL-3636 ColorUtils cleaner test for hex color commit | commitdiff | tree | snapshot
2020-05-28 soaresMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2020-05-28 BobHansonGitter comment 2020.05.28 Cache.log.err(msg) not appearing commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-3624 use temp file for SIFT download in JS, correct... commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-3624 log when SIFTS mapping fails commit | commitdiff | tree | snapshot
2020-05-27 Ben SoaresJAL-3541 ensure deletion of cloverReportDir commit | commitdiff | tree | snapshot
2020-05-27 Ben SoaresJAL-3541 small fix for clover.xml location expected... commit | commitdiff | tree | snapshot
2020-05-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-05-26 gmungocJAL-1889 disable test failing on build server commit | commitdiff | tree | snapshot
2020-05-26 soaresMerge branch 'bug/JAL-3541_cloverReport_gradle_task_fai... commit | commitdiff | tree | snapshot
2020-05-26 soaresJAL-3541 added a property/variable style comment to... bug/JAL-3541_cloverReport_gradle_task_fails commit | commitdiff | tree | snapshot
2020-05-26 gmungocJAL-3624 log when SIFTS mapping fails commit | commitdiff | tree | snapshot
2020-05-26 gmungocMerge branch 'feature/JAL-3624siftsInJS' into develop commit | commitdiff | tree | snapshot
2020-05-25 soaresJAL-3541 selectively merged build.gradle and gradle... commit | commitdiff | tree | snapshot
2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERS... commit | commitdiff | tree | snapshot
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test commit | commitdiff | tree | snapshot
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1 commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs() commit | commitdiff | tree | snapshot
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3613 remove debug code committed in error commit | commitdiff | tree | snapshot
2020-05-15 Ben SoaresJAL-3541 Fixed report path for build artifacts commit | commitdiff | tree | snapshot
2020-05-14 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting commit | commitdiff | tree | snapshot
2020-05-14 Ben SoaresJAL-3541 Individual tests now instrumented and reported... commit | commitdiff | tree | snapshot
2020-05-12 Ben SoaresJAL-3541 Helpers for running tests, and other commands... commit | commitdiff | tree | snapshot
2020-05-12 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor... commit | commitdiff | tree | snapshot
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... commit | commitdiff | tree | snapshot
2020-04-22 soaresJAL-3225 save auto formatting settings in org.eclipse... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentati... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release... commit | commitdiff | tree | snapshot
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy commit | commitdiff | tree | snapshot
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