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jalview.git
2008-09-04
jprocter
merge from 2_4_Release branch
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2008-08-27
jprocter
no newline after licence comment
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2008-08-27
jprocter
added Release_2_4_branch
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2008-08-27
jprocter
fix vamas homedir link
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2008-08-27
jprocter
added keystore config properties
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2008-08-26
jprocter
update and test release build system
Release_2_4
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2008-08-26
jprocter
2.4 release documentation update menus, service refs...
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2008-08-26
jprocter
update Jpred3 service referenec
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2008-08-26
jprocter
allow '|' to be entered in URL text box and added regex...
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2008-08-26
jprocter
set title of viewer frame after file has been loaded...
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2008-08-26
jprocter
future bug fix todo
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2008-08-26
jprocter
new thread for initting of DBRefFetcher with latest...
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2008-08-26
jprocter
uses shared singleton from jalview.gui.SequenceFetcher...
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2008-08-26
jprocter
added singleton access method to retrieve the latest...
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2008-08-26
jprocter
bugfix todo for the 'edit sequence' command
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2008-08-26
jprocter
tooltip for fetch db refs and more generic regex for...
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2008-08-26
jprocter
pdb xrefs added as dbrefs and as PDB file links
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2008-08-26
jprocter
ensure successive matches to a regex have distinct...
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2008-08-20
jprocter
Use 0f rather than NaN to specify non-valued annotation...
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2008-08-20
jprocter
tooltip displays formatted annotation row description...
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2008-08-19
jprocter
beginning of fix for embl/cds/highlighting IO in https...
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2008-08-19
jprocter
fix for arrayoutofbounds bug when secondary structure...
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2008-08-19
jprocter
better check for molecule type when identifying interna...
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2008-08-19
jprocter
regex links for launching URL from single click on...
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2008-08-15
jprocter
update text and version checker
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2008-08-15
jprocter
dialog size on macs
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2008-08-15
jprocter
check for crossreferences every time the menus are...
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2008-08-15
jprocter
catch invalid URL link exception properly
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2008-08-15
jprocter
increase height of dialog
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2008-08-15
jprocter
allow '|' in regex for URL links to be recovered from...
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2008-08-15
jprocter
safer copy constructor
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2008-08-15
jprocter
xrefs retrieved from Uniprot
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2008-08-15
jprocter
added castor back onto classpath
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2008-08-13
jprocter
check for null viewport on dataset recovery
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2008-08-13
jprocter
ensure input data can be recovered for tree and PCA...
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2008-08-13
jprocter
do not try to cancel jobs that cannot be cancelled
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2008-08-12
jprocter
ascii comment
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2008-08-12
jprocter
mac logo resourcelocation hack
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2008-08-12
jprocter
fix artefacts (again)
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2008-08-12
jprocter
corrected target name in documentation
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2008-08-12
jprocter
URL help update
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2008-08-12
jprocter
added nojmol parameter to disable check for jmol
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2008-08-12
jprocter
simpler regex-replace for path
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2008-08-12
jprocter
fixing paths
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2008-08-12
jprocter
regex blah
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2008-08-12
jprocter
trailing slash regexed out
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2008-08-12
jprocter
path fixing
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2008-08-12
jprocter
resources are relative to root of jalview install path
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2008-08-12
jprocter
update to InstallAnywhere 2008 VP1
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2008-08-11
jprocter
regular expression based URL link generation
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2008-08-11
jprocter
Ensure 'None' translates into no colour scheme applied
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2008-08-11
jprocter
Upgraded to IA Standard 2008 VP1
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2008-08-11
jprocter
Upgraded to InstallAnywhere 2008 Standard ValuePack 1
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2008-08-10
jprocter
migration to automated build test
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2008-08-09
jprocter
fix default build path
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2008-08-09
jprocter
exclude any InstallAnywhere build artefacts
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2008-08-09
jprocter
installanywhere to a destination location
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2008-08-07
jprocter
updating installAnywhere autobuild
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2008-08-07
jprocter
headless build of InstallAnywhere installer
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2008-08-06
jprocter
generation of additional URLs for DBRefs on a sequence...
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2008-08-06
jprocter
extra checks for datasetsequence for when getDbRefs...
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2008-08-06
jprocter
getDBRefs now always returns DBRefArray if it exists...
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2008-08-05
jprocter
vamsas documentation
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2008-08-05
jprocter
new vamsas session does not open a dialog box
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2008-08-05
jprocter
web services and sequence fetcher added to contents
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2008-08-05
jprocter
added sequence fetcher and sequence features retrieval...
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2008-08-05
jprocter
updated statement of limitations for interactive annota...
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2008-08-05
jprocter
new sequence fetcher documentation
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2008-08-05
jprocter
ensure das sequence sources are refreshed when das...
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2008-08-05
jprocter
showbutton default is true
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2008-08-04
jprocter
stackoverflow fix
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2008-08-04
jprocter
PFAM retrieval and new applet parameter
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2008-08-04
jprocter
pfam seed and full alignment retrieval and nicer orderi...
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2008-08-04
jprocter
added 'showbutton' applet parameter
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2008-08-01
jprocter
update to feature list (more to come here for 2.4 release)
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2008-08-01
jprocter
new SequenceFetcher gui and visual delay indication...
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2008-08-01
jprocter
updated jalview version of dasobert 1.53e client and...
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2008-08-01
jprocter
todo
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2008-08-01
jprocter
interface for windows that display progress bars
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2008-07-31
jprocter
use canonical DbSource name in GUI box, and ensure...
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2008-07-31
jprocter
refactored method for registering instance of a dbSourc...
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2008-07-31
jprocter
quick fix for the new uniprot name schema - description...
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2008-07-31
jprocter
added specific retrieval arguments to SequneceFetcher...
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2008-07-18
jprocter
resolve 1:many mappings for sequence associated annotat...
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2008-07-18
jprocter
resolve 1:many mappings from feature sequence ID to...
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2008-07-18
jprocter
allow findSeq to begin *after* a given sequence in...
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2008-07-18
jprocter
Sequence label colour stored for each sequence group
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2008-07-18
jprocter
comment
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2008-07-18
jprocter
annotation file format updated to take idColour and...
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2008-07-18
jprocter
Sequence label colour stored for each sequence group
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2008-07-18
jprocter
User defined colourschemes are automatically generated...
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2008-07-18
jprocter
prevent exception when no default timeout is specified
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2008-07-11
jprocter
ensure annotationElements in non-graphical annotation...
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2008-06-30
jprocter
javadoc and constraint to ensure annotation labels...
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2008-06-30
jprocter
java 1.1 compatibility
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2008-06-30
jprocter
timing of 'on load' output before any gui thread operations
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2008-06-30
jprocter
safer retrieval of groovy scripts from URLs
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2008-06-30
jprocter
included includeGaps flag in clustalW colour calculatio...
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2008-06-26
jprocter
added URLEncoder.encode to properly escape CGI encoded...
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2008-06-23
jprocter
local sequence properties are preserved in SeqCigar...
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