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jalview.git
2019-04-23 Jim ProcterJAL-3130 add JAVA_VERSION to shadowJar classifier so... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 make sure only libDistDir/*.jar are added... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown channel structure is {build... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 specify file object in projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 JAL-3224 patch URL paths to point to jalview... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 provide absolute module path as J11 compile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterMerge branch 'jims/JAL-3130_Java11_Gradle_publishing... commit | commitdiff | tree | snapshot
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-1793 basic help text for VCF option commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 additional release notes commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 release notes first pass complete commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not... commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-2620 updated help page to mention alternative genet... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL" commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 fix 2.11 html anchor in docs commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 Jalview 2.11 what’s New and estimated release... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 tweak PCA documentation commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele... commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Add commons-compress-1.18.jar commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Bundling appropriate Mac OS/Windows JRE as... commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 New version of getdown which will cope with... commit | commitdiff | tree | snapshot
2019-04-16 Ben SoaresJAL-3130 moved resources/install4j to utils/install4j commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 tidy up system.output jims/JAL-3130_Java11_Gradle_publishing commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 call Jalview via the Test JVM’s JAVA_HOME... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 refactored ‘clover’ to ‘use_clover’ since... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 reportCurrentWorkingDirectory test... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3196 change default are resource properties to... commit | commitdiff | tree | snapshot
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Somewhere in the old libs the Jws2 client... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle... commit | commitdiff | tree | snapshot
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt... commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 write clover.xml during cloverReport phase commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 make sure testng-results.xml is generated commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 instrument main and compile separately to... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 gradle test now runs open clover 4.3.1 and... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 ensure J11 libs/modules are added when buildin... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 clean up eclipse class path for dependencies... commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3018 REST version updated to 10.0 commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 adapted getdown src commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG... commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -... commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 JAL-3007 more files needed for getdown launcher commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 JAL-3007 improvements to gradle build commit | commitdiff | tree | snapshot
2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top commit | commitdiff | tree | snapshot
2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel... bug/JAL-3218scalePanelPopups commit | commitdiff | tree | snapshot
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11. Now... commit | commitdiff | tree | snapshot
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... commit | commitdiff | tree | snapshot
2019-03-29 gmungocJAL-3140 InstallAnywhere updated to intervalstore-v1... commit | commitdiff | tree | snapshot
2019-03-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-03-29 gmungocJAL-3140 intervalstore now v1.0 (public release) commit | commitdiff | tree | snapshot
2019-03-29 Jim ProcterJAL-3111 Disable the pubapplet target in build.xml... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 biojava dependencies commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 fix libquagua dependency paths - needs to... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 fix jabaws dependency name in IA config commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 intervalstore library on IA classpath commit | commitdiff | tree | snapshot
2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 typo in IA config commit | commitdiff | tree | snapshot
2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-03-28 gmungocJAL-1889 patch for failing isControDown test on build... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 update InstallAnywhere dependencies for change... commit | commitdiff | tree | snapshot
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop commit | commitdiff | tree | snapshot
2019-03-27 gmungocJAL-2620 improved error reporting on failure to load... commit | commitdiff | tree | snapshot
2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned... commit | commitdiff | tree | snapshot
2019-03-25 gmungocJAL-3127 scripts updated for method signature change commit | commitdiff | tree | snapshot
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite commit | commitdiff | tree | snapshot
2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout() commit | commitdiff | tree | snapshot
2019-03-22 Ben SoaresJAL-3130 adding two more modules picked up by gradle... commit | commitdiff | tree | snapshot
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ... commit | commitdiff | tree | snapshot
2019-03-22 gmungocJAL-1889 more debug logging commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 better debug logging commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 temporary debug in findColumn() commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 added belt and braces deleteOnExit() to test... commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 correct props param, remove dasserver, output... commit | commitdiff | tree | snapshot
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 more diagnostics for CommandLineOperations commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 diagnostics for failing test on server commit | commitdiff | tree | snapshot
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff | tree | snapshot
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip commit | commitdiff | tree | snapshot
2019-03-20 gmungocJAL-3212 unit test and fix for Scale Panel bug commit | commitdiff | tree | snapshot
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules... commit | commitdiff | tree | snapshot
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 removing no longer needed JRE (going to use... commit | commitdiff | tree | snapshot
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