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jalview.git
2016-11-16
Jim Procter
Merge branch 'features/JAL-1723_sequenceReport' into...
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2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
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2016-11-16
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-11-16
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-16
Jim Procter
JAL-2325 release notes for 2.10.1 - pass one
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2016-11-16
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-16
kiramt
JAL-2282 Updated docs with information about when warni...
bug/JAL-2282
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2016-11-16
gmungoc
JAL-2323 render disulfide bond correctly on overview...
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2016-11-16
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-16
tcofoegbu
JAL-2322 JAL-2309 replaced references to isheadless...
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2016-11-16
Jim Procter
JAL-2318 revised documentation for above PID Threshold
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-16
gmungoc
JAL-2324 fix and tests for comparison of Float.NaN...
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2016-11-16
gmungoc
JAL-2319 corrected reporting of SIFTS mapping
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-16
Jim Procter
JAL-2177 remove signature from desktop library Jmol jar
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2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
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2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
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2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
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2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
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2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
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2016-11-14
gmungoc
JAL-2296 parse Chimera atomspec to AtomSpec
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2016-11-14
gmungoc
JAL-2296 report whether SequenceFeature actually added...
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2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
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2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
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2016-11-11
Jim Procter
JAL-2177 remove Jmol project signature from jar so...
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2016-11-11
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-11
gmungoc
JAL-2295 tests now 'network-free' with local PDB and...
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2016-11-11
gmungoc
JAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
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2016-11-11
gmungoc
JAL-2295 improved integrity of 'isFinishedInit' flag
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2016-11-11
gmungoc
JAL-1270 corrected command-line args
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2016-11-11
gmungoc
JAL-2295 set finishedInit to false before checking...
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2016-11-11
gmungoc
JAL-2295 test that verifies transfer of features to...
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2016-11-11
gmungoc
JAL-2295 sorted properties for readability
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2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
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2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
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2016-11-10
tcofoegbu
Merge branch 'bug/JAL-2317_jmol_chimera-chain-factorisa...
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2016-11-10
tcofoegbu
Merge branch 'develop' into bug/JAL-2317_jmol_chimera...
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2016-11-10
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
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2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
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2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
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2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
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2016-11-09
gmungoc
JAL-2295 single constant for "RESNUM" feature name
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2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08
gmungoc
JAL-2301 corrected search example to match AA propertie...
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2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservati...
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2016-11-08
gmungoc
JAL-1961 added link to GFF3 format as well as GFF2
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2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
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2016-11-08
gmungoc
JAL-2295 method added to return a compact mapped range...
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2016-11-08
kiramt
JAL-2309 Made test timeout slightly longer
bug/JAL-2309
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2016-11-08
kiramt
JAL-2309 Adjusted timeout on headless tests
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2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
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2016-11-08
gmungoc
JAL-2295 make RangeComparator a top level class for...
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2016-11-08
tcofoegbu
JAL-2280 Updated spanish translation as recommended...
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2016-11-08
tcofoegbu
JAL-2292 updated method calls
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2016-11-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-08
tcofoegbu
JAL-2292 renamed method and improved implementation...
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2016-11-07
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-07
gmungoc
JAL-1270 renamed helper method so it is not run as...
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2016-11-07
gmungoc
JAL-2272 another test case
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2016-11-07
gmungoc
JAL-1805 groups=Functional added where missing
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2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
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2016-11-07
gmungoc
JAL-2318 updated help text
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2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
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2016-11-07
gmungoc
JAL-2295 handle no progress bar message properly
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2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
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2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
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2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-04
kiramt
JAL-2315 Clear sequenceURLLinks if all sequence links...
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2016-11-04
tcofoegbu
JAL-2292 squashed bug that breaks feature mapping for...
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2016-11-04
tcofoegbu
JAL-2292 added javadoc for compareChar(..) utility...
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2016-11-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-04
tcofoegbu
JAL-2195 JAL-2262 house keeping
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2016-11-04
tcofoegbu
JAL-2292 fix for wrong mapping output in sequence mappi...
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2016-11-04
tcofoegbu
JAL-2292 Wrote utility method for comparing two char...
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2016-11-04
tcofoegbu
JAL-2292 Unit test for utility method for comparing...
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2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-04
kiramt
JAL-2282 Better check for existing url links
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2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04
kiramt
JAL-2282 Remove Cache dependency from applet
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2016-11-04
kiramt
JAL-2282 Message box stays on top at Jalview open;...
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2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04
gmungoc
JAL-2302 unit tests added for Finder
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2016-11-03
kiramt
JAL-2282 Link menu disabled if there are no valid links
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2016-11-03
kiramt
JAL-2282 Updated warn.url_must_contain
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2016-11-03
kiramt
JAL-2282 If checkbox on warning dialog is unclicked...
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2016-11-03
kiramt
JAL-2281 Back out unit test update, as Mungo already...
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2016-11-03
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2016-11-03
kiramt
JAL-2308 Fixed hiddenColsTest
bug/JAL-2308
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2016-11-03
tcofoegbu
JAL-2312 unit test for bug fix - repeated mapping gener...
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2016-11-03
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-03
tcofoegbu
JAL-2312 Bug fix for repeated mapping generation from...
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2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
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2016-11-03
gmungoc
JAL-2281 test added to show searchRefs is now not case...
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2016-11-03
kiramt
JAL-2281 Minor unit test addition
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2016-11-03
gmungoc
JAL-2295 step 1 new menu item to transfer Jalview attri...
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2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-02
kiramt
JAL-2281 Unit test updates
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2016-11-02
Jim Procter
JAL-345 JAL-1738 menu item, AlignFrame action listener...
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