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jalview.git
2022-06-24 Jim ProcterJAL-2349 JAL-3855 resolve sequence position for contact... commit | commitdiff | tree | snapshot
2022-06-10 Jim ProcterJAL-2349 JAL-4027 JAL-3855 quick hack to add contact... commit | commitdiff | tree | snapshot
2022-06-10 Jim ProcterJAL-4027 getter for contact matrices on the Alignment. commit | commitdiff | tree | snapshot
2022-06-10 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2022-06-10 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releas... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4014 release notes for JAL-4026 patches commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 increase timeouts for command line ops commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 always wait 50ms before checking if the calcul... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4014 release notes for JAL-4023 and JAL-4024 commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4012 what’s new and release notes (in the new style... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4004 delete temporary file mistakenly checked in commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterMerge branch 'issues/JAL-3553+JAL-3978+JAL-3989+JAL... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang commit | commitdiff | tree | snapshot
2022-06-07 Ben SoaresJAL-4020 class formatting commit | commitdiff | tree | snapshot
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing... commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 updated tests commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 class reformatting commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation... commit | commitdiff | tree | snapshot
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 Added search for PyMOLWinWithConsole.bat ... commit | commitdiff | tree | snapshot
2022-06-06 Jim ProcterJAL-4023 store distances as doubles commit | commitdiff | tree | snapshot
2022-05-12 Ben SoaresMerge branch 'develop' into issues/JAL-3553+JAL-3978... issues/JAL-3553+JAL-3978+JAL-3989+JAL-4004_merged_with_develop commit | commitdiff | tree | snapshot
2022-05-11 Jim ProcterMerge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into... commit | commitdiff | tree | snapshot
2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3 commit | commitdiff | tree | snapshot
2022-05-10 Jim ProcterJAL-4008 update jabaws client to 2.2.1 - definitely... patch/JAL-4008_jabaws_2_2_1_patch commit | commitdiff | tree | snapshot
2022-05-10 Jalview Development... Merge branch 'releases/Release_2_11_2_Branch' Release_2_11_2_2 commit | commitdiff | tree | snapshot
2022-05-10 Ben SoaresJAL-4004 cosmetic improvements for Java documentation... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 gradle task releasesTemplates now part of... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 working templates and generated whatsNew.html... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 remove stray empty h3 headers commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 gradle releasesTemplates builds releases.html commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 Temporary mechanism to add JalviewJS link... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-3989 Code tidying, added JVL_HEADER for older versi... commit | commitdiff | tree | snapshot
2022-05-05 Ben SoaresJAL-4004 Now generating hugo files from help/markdown/... commit | commitdiff | tree | snapshot
2022-05-04 Ben SoaresJAL-4004 existing releases-VERSION.md files and release... commit | commitdiff | tree | snapshot
2022-05-04 Ben SoaresJAL-4004 locations for markdown to go into whatsnew... commit | commitdiff | tree | snapshot
2022-05-03 Ben SoaresJAL-3989 improved parsing and formatting now using... commit | commitdiff | tree | snapshot
2022-05-03 Ben SoaresJAL-1544 minor errors in releases.html and one missing... commit | commitdiff | tree | snapshot
2022-04-29 Ben SoaresJAL-3989 small improvements to output markdown commit | commitdiff | tree | snapshot
2022-04-28 Ben SoaresJAL-3989 add in issue shortcodes to the archive version... commit | commitdiff | tree | snapshot
2022-04-27 Ben SoaresJAL-1544 version number typo, probably copy and paste commit | commitdiff | tree | snapshot
2022-04-27 Ben SoaresJAL-3989 Populate template files for hugo build: archiv... commit | commitdiff | tree | snapshot
2022-04-25 Ben SoaresJAL-3989 moved getdown build dirs to build/website... commit | commitdiff | tree | snapshot
2022-04-25 Ben SoaresJAL-3989 Independent creation of JSON installer sections commit | commitdiff | tree | snapshot
2022-04-25 Ben SoaresJAL-3978 clean up unnecessary local variables for JALVI... commit | commitdiff | tree | snapshot
2022-04-22 Ben SoaresJAL-3989 Changed to using com.google.common.hash for... commit | commitdiff | tree | snapshot
2022-04-21 Ben SoaresMerge branch 'develop' into merge/JAL-3978+JAL-3553... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3365_extendedDSSP_via_stockholm... commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterMerge branch 'task/JAL-3992_update_docs' into bug/JAL... bug/JAL-3365_extendedDSSP_via_stockholm commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterJAL-3992 fix path commit | commitdiff | tree | snapshot
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... commit | commitdiff | tree | snapshot
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in... commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 release notes and what’s new Release_2_11_2_1 commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d... commit | commitdiff | tree | snapshot
2022-04-05 Ben SoaresJAL-3989 slight refactor of build.gradle, add more... commit | commitdiff | tree | snapshot
2022-04-04 Ben SoaresJAL-3989 fix a build date once in build.gradle, not... commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3983 release note for JAL-3985 commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterMerge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS... commit | commitdiff | tree | snapshot
2022-03-31 Ben SoaresMerge branch 'task/JAL-3553_improved_install4j_output_t... commit | commitdiff | tree | snapshot
2022-03-31 Ben SoaresMerge branch 'develop' into improvement/JAL-3978_add_gr... commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3085 update tests and mock responses, new P0dtd1... commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3985 formatting commit | commitdiff | tree | snapshot
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3976 fix mock PDBFTS query & responses patch/JAL-3976_3dbeaconsnull commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 known issue note for JAL-3984 commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 release notes for JAL-3975 and known issue... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterMerge branch 'bug/JAL-360+JAL-3975_keyboard_input_lost_... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog... commit | commitdiff | tree | snapshot
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 update release notes for JAL-3973 commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3973 exclude the original RELEASE file so gradle... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterMerge branch 'bug/JAL-3973_source_tarball_not_building... commit | commitdiff | tree | snapshot
2022-03-30 Jim ProcterJAL-3983 release 2.11.2.1 date and release notes commit | commitdiff | tree | snapshot
2022-03-25 Jim ProcterJAL-3980 JAL-3979 TODOs bug/JAL-3980_JAL-3981_tooltips_sequence_details commit | commitdiff | tree | snapshot
2022-03-25 Jim ProcterJAL-3980 defensive copy - inefficient but fixes bug commit | commitdiff | tree | snapshot
2022-03-25 Jim ProcterJAL-3981 Additional line breaks - sort of helps commit | commitdiff | tree | snapshot
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's... commit | commitdiff | tree | snapshot
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing commit | commitdiff | tree | snapshot
2022-03-23 Jim ProcterJAL-3976 update tests commit | commitdiff | tree | snapshot
2022-03-18 Ben SoaresJAL-3978 Using getdowninstanceappdir and getdowninstanc... commit | commitdiff | tree | snapshot
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