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jalview.git
2014-06-03 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 documentation and release notes commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-690 jvp rather than jar for save/restore state... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 update version/branch version for this branch commit | commitdiff | tree | snapshot
2014-06-03 Jim Procterregress fix on JAL-690 - insert association elements... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 whats new and release history for 2.8.1 (still... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 JAL-1350 rework documentation for 2.8.1 commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1164 note that feature introduced in 2.8.0b1 commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 JAL-1355 documentation commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1473 exclude score models not compatible with PCA... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 gui changes (score models, flanking regions... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 formatting commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 additional tree score functions commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 PAM250 documentation commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 document updated PCA interface commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 formatting commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1503 formatting build file commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score... commit | commitdiff | tree | snapshot
2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation... commit | commitdiff | tree | snapshot
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix... commit | commitdiff | tree | snapshot
2014-05-28 Jim ProcterMerge branch 'docs/2_8_1_release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-05-28 Jim ProcterJAL-1509 use local deployJava commit | commitdiff | tree | snapshot
2014-05-28 Jim Procterfix for JAL-1510 - workaround for IE9 commit | commitdiff | tree | snapshot
2014-05-28 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-05-28 Jim ProcterJAL-1507 bugfix commit | commitdiff | tree | snapshot
2014-05-27 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-05-27 Jim ProcterJAL-1509 update deployJava.js from java.com/js/deployJa... commit | commitdiff | tree | snapshot
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls... commit | commitdiff | tree | snapshot
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label... commit | commitdiff | tree | snapshot
2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus... commit | commitdiff | tree | snapshot
2014-05-23 Jim ProcterJAL-1445 updated documentation and added link in whatsNew commit | commitdiff | tree | snapshot
2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selec... commit | commitdiff | tree | snapshot
2014-05-22 Jim Procterremove non-utf8 characters in help pages commit | commitdiff | tree | snapshot
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff | tree | snapshot
2014-05-22 Jim ProcterJAL-1355 JAL-1503 update i18n note commit | commitdiff | tree | snapshot
2014-05-22 Jim ProcterJAL-1503 new entry for 2.8.1 release history commit | commitdiff | tree | snapshot
2014-05-22 Jim ProcterJAL-1503 JAL-1355 note about internationalisation in... commit | commitdiff | tree | snapshot
2014-05-17 Jim ProcterJAL-1477 documentation and tooltips commit | commitdiff | tree | snapshot
2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into Release_2_8_1_Branc... commit | commitdiff | tree | snapshot
2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted commit | commitdiff | tree | snapshot
2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to... commit | commitdiff | tree | snapshot
2014-05-12 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch_i18n commit | commitdiff | tree | snapshot
2014-05-12 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-05-12 Jim ProcterJAL-1397 catch other random version strings commit | commitdiff | tree | snapshot
2014-05-12 Jim Procterpatch for regression introduced JAL-1397 commit | commitdiff | tree | snapshot
2014-05-02 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour... commit | commitdiff | tree | snapshot
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct... commit | commitdiff | tree | snapshot
2014-05-02 Jim Procterformatting commit | commitdiff | tree | snapshot
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1397 (probably buggy) test for recovery of backgrou... commit | commitdiff | tree | snapshot
2014-05-01 Jim Procterremove todo commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on... commit | commitdiff | tree | snapshot
2014-05-01 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-05-01 Jim Procterproperly quit so JUnit marks tests as successful commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for... commit | commitdiff | tree | snapshot
2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current... commit | commitdiff | tree | snapshot
2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment... commit | commitdiff | tree | snapshot
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker... commit | commitdiff | tree | snapshot
2014-05-01 Jim Proctermake sure valid value for non-gapped calculation with... commit | commitdiff | tree | snapshot
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow... commit | commitdiff | tree | snapshot
2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into Release_2_8_1_B... commit | commitdiff | tree | snapshot
2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy... commit | commitdiff | tree | snapshot
2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlig... commit | commitdiff | tree | snapshot
2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch_i18n commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-1322 avoid rounding error causing non functional... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-1322 allow slider to reach maximum value for parameter commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-1322 only update slider when return is pressed commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into Release_2_8_1_B... commit | commitdiff | tree | snapshot
2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder predict... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices colou... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 JAL-1268 document RNA Helices and T-Coffee... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices' commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin... commit | commitdiff | tree | snapshot
2014-04-27 Jim Proctertest for JAL-952 commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into Release_2_8... commit | commitdiff | tree | snapshot
2014-04-25 Jim Procterfix for JAL-1268 commit | commitdiff | tree | snapshot
2014-04-25 Jim Proctertest for JAL-1268 commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset... commit | commitdiff | tree | snapshot
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