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jalview.git
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr... commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2413 extracted new method SetUtils.countDisjunction() commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2423 refactored method to build panel title for... commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2416 SeqSpace PCA now provided as an alternative... commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2416 score models now held in order added commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2416 allow space in score matrix name commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2416 order score models by order of addition rather... commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2403 redundant 'implements' removed commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2403 extract method refactoring of FeatureScoreMode... commit | commitdiff | tree | snapshot
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV" commit | commitdiff | tree | snapshot
2017-02-14 gmungocJAL-2393 example (unvalidated) blosum80 matrix to play... commit | commitdiff | tree | snapshot
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop... commit | commitdiff | tree | snapshot
2017-02-13 gmungocJAL-2416 allow alphabet symbol (optional) in first... commit | commitdiff | tree | snapshot
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... commit | commitdiff | tree | snapshot
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... commit | commitdiff | tree | snapshot
2017-02-10 gmungocJAL-2371 small move of code, typo correction commit | commitdiff | tree | snapshot
2017-02-09 Jim ProcterMerge branch 'features/JAL-2316' into develop commit | commitdiff | tree | snapshot
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316 commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2401 tweaked button text, added Spanish commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2371 no test for lower case consensus as not expect... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2371 skip upper-casing consensus as it already is commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup... commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 set initial selection group alignment context commit | commitdiff | tree | snapshot
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in... commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2316 tidying preferences help page commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2316 tidied up documentation for Links tab commit | commitdiff | tree | snapshot
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... commit | commitdiff | tree | snapshot
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for... commit | commitdiff | tree | snapshot
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services... commit | commitdiff | tree | snapshot
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme... commit | commitdiff | tree | snapshot
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added commit | commitdiff | tree | snapshot
2017-02-01 gmungocJAL-2371 (slight!) simplification of isApplicableTo() commit | commitdiff | tree | snapshot
2017-02-01 gmungocJAL-2383 and Spanish! commit | commitdiff | tree | snapshot
2017-01-31 gmungocJAL-2371 commented code removed only commit | commitdiff | tree | snapshot
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... commit | commitdiff | tree | snapshot
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... commit | commitdiff | tree | snapshot
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... commit | commitdiff | tree | snapshot
2017-01-27 gmungocJAL-2099 belated unit test commit | commitdiff | tree | snapshot
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 commit | commitdiff | tree | snapshot
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2360 corrected comment commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2360 C is Pink with consensus > 85% (not 100%) commit | commitdiff | tree | snapshot
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments commit | commitdiff | tree | snapshot
2017-01-26 gmungocJAL-2380 code tidy after review commit | commitdiff | tree | snapshot
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... commit | commitdiff | tree | snapshot
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... commit | commitdiff | tree | snapshot
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2385 tweak to applet 'switch colour slider context' commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2385 update slider settings when switching slider... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 fixup from last merge commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 check for null, spelling commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi... commit | commitdiff | tree | snapshot
2017-01-20 gmungocJAL-2383 restore group conservation slider setting... commit | commitdiff | tree | snapshot
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stret... commit | commitdiff | tree | snapshot
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into... commit | commitdiff | tree | snapshot
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two... commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-1270 class renamed commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply() commit | commitdiff | tree | snapshot
2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-1270 renamed AlignmentGenerator, and added peptide... commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-2379 null references to PCA model when panel is... commit | commitdiff | tree | snapshot
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 groovy script that registers a new file format commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... commit | commitdiff | tree | snapshot
2017-01-11 gmungocJAL-2344 addSequence() method added to support Groovy... commit | commitdiff | tree | snapshot
2017-01-11 kiramtJAL-2316 Spanish message translations commit | commitdiff | tree | snapshot
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 commit | commitdiff | tree | snapshot
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit... commit | commitdiff | tree | snapshot
2017-01-09 kiramtJAL-2316 Prevent applet from loading null links into... commit | commitdiff | tree | snapshot
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI commit | commitdiff | tree | snapshot
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... commit | commitdiff | tree | snapshot
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2371 slight simplification of findColour overrides commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff | tree | snapshot
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup() commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs commit | commitdiff | tree | snapshot
2017-01-05 gmungocJAL-2371 add test for toggling ignore gaps with PID... commit | commitdiff | tree | snapshot
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