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jalview.git
2017-10-26 gmungocJAL-2792 html table for Feature Details report commit | commitdiff | tree | snapshot
2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-1739 Javadoc updated for Lambda expression parser... commit | commitdiff | tree | snapshot
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and... commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2768 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2739 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2682 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2253 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-2737 JAL-1854 corrected package suppressions, updat... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 PID script in release notes commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score... commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2755 update caller for method rename! commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2609 adjustments for test findings commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 put chromosomal dbref first in report commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add lookup of cds/cdna gene loci commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add species lookup commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add missing Javadoc commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 rename EnsemblInfo as EnsemblData, add 'true... commit | commitdiff | tree | snapshot
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2777 JAL-2773 release notes commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 release notes commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterMerge branch 'features/JAL-2773_dontalwaysrecolourstruc... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of... commit | commitdiff | tree | snapshot
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tests updated for revised label width commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns... commit | commitdiff | tree | snapshot
2017-10-11 Jim ProcterJAL-2757 release notes commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 minor test updates following review commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2738 javadoc correction commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2609attemptedmerge tidy commit | commitdiff | tree | snapshot
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2690attemptedmerge seems to work commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2523 release notes commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2690attemptedmerge partial merge commit | commitdiff | tree | snapshot
2017-10-10 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 convenience method to get model organisms commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterMerge branch 'patch/JAL-2446_mergeconflictmissed' into... commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2738 ensure variant feature is in forward sense commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterMerge branch 'patch/JAL-2116_java9_antjnlpfix' into... commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterJAL-2116 fix jnlp file post-processing so java 9 module... commit | commitdiff | tree | snapshot
2017-10-06 gmungocJAL-2753 add new jar to lib folder! commit | commitdiff | tree | snapshot
2017-10-06 gmungocJAL-2753 update to htsjdk 2.12.0 (requires Java 8) commit | commitdiff | tree | snapshot
2017-10-06 gmungocJAL-2754 update to Java 1.8 commit | commitdiff | tree | snapshot
2017-10-06 gmungocJAL-2738 unit test for mapping failure case commit | commitdiff | tree | snapshot
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response commit | commitdiff | tree | snapshot
2017-10-05 gmungocJAL-2738 warn (in console) when non chromosomal coordin... commit | commitdiff | tree | snapshot
2017-10-05 gmungocJAL-2738 helper method for convolving mappings commit | commitdiff | tree | snapshot
2017-10-05 gmungocJAL-2755 transfer chromosomal reference from transcript... commit | commitdiff | tree | snapshot
2017-10-05 gmungocJAL-2738 method to compound / traverse / convolve two... commit | commitdiff | tree | snapshot
2017-10-05 gmungocJAL-2744 add score to feature details report, descripti... commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2738 fix bug of premature exit from adding attributes commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2523 start of refactoring... commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2738 match consequence "Allele" to VCF allele;... commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2744 handle null features list commit | commitdiff | tree | snapshot
2017-10-03 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' into... commit | commitdiff | tree | snapshot
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader commit | commitdiff | tree | snapshot
2017-10-03 gmungocJAL-2738 code formatting commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2738 code tidy up, null checks &c commit | commitdiff | tree | snapshot
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
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