jalview.git
2012-06-07 jprocterJAL-976 ensure job id gets written out if there's an...
2012-06-04 jprocterjavatidy
2012-05-31 jprocterjavatidy
2012-05-31 jprocterformatting
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by...
2012-05-30 jprocterupdated schema to store and recover belowAlignment...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-30 jprocterformatting
2012-05-30 jprocterformatting
2012-05-24 jprocterTODO: JAL-1108
2012-05-24 jprocterJAL-1078 - removed 'Load Score File' menu item and...
2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added...
2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so...
2012-05-24 jproctertodo: JAL-1105
2012-05-24 jproctertodo: JAL-1108
2012-05-24 jprocterensure annotation isn't added twice - note - this could...
2012-05-24 jprocterJAL-1107 - documentation explaining '*' and '+' in...
2012-05-24 jprocterpatch for occasional NPE when applet is quit
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio...
2012-05-23 jprocterJAL-1067 report any warning messages to user
2012-05-23 jprocterTODO for JAL-976
2012-05-23 jproctertodo for JAL-1106
2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation...
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried...
2012-05-23 jprocterJAL-1102 todos and status updates when data is added
2012-05-23 jproctertodo JAL-1104 : functions to refactor
2012-05-23 jproctertodo: blocked by JAL-1104
2012-05-23 jprocterJAL-958 - ensure logo is rendered even if consensus...
2012-05-22 jprocterupdate the copy constructor
2012-05-22 jprocterJAL-1065,JAL-1066 propagated notification of coloursche...
2012-05-22 jprocterJAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2012-05-16 jprocterwarning dialog - fixes JAL-1099
2012-05-16 jprocterfixed JAL-1086: pass column index so colourscheme profi...
2012-05-16 jprocterJAL-958 - don't try to draw all zero profiles
2012-05-16 jprocterJAL-958 JAL-1086 formatting and remove old code
2012-05-14 jprocterpack before displaying splashscreen to ensure its prefe...
2012-05-14 jprocterformatting
2012-05-14 jprocterJAL-1097 - ensure replace comma for semicolon always...
2012-05-14 jprocterMerge branch 'JAL-972-jdas' into develop
2012-05-14 jprocterJAL-1075
2012-05-14 jprocterJAL-1061,JAL-1075 - first pass at implementing sequence...
2012-05-14 jprocterclean up old commented code
2012-05-14 jprocterJAL-1095 - todo
2012-05-14 jprocterjavadoc
2012-05-11 jprocterJAL-972 workaround for working out source URL for pre...
2012-05-11 jprocterformatting
2012-05-11 jprocterJAL-972 migration from dasobert to jdas registry URLs
2012-05-11 jprocterJAL-972 local do not have a coordsys element with sourc...
2012-05-11 jprocterJAL-424 TODO: new method signature for local source...
2012-05-10 jprocterJAL-1085 - ensure sequence fetching client waits around...
2012-05-10 jprocterJAL-972 JAL-1084 propagate reference to local authentic...
2012-05-10 jprocterJAL-1083 - graceful failover to single ID query mode...
2012-05-10 jprocterformatting
2012-05-10 jprocterJAL-1083 graceful failover to one ID per sequences...
2012-05-10 jprocterJAL-1075 better layout and info box for source browser
2012-05-01 jprocterJAL-1075 tweak layout and test display for tree based...
2012-04-24 jprocterJAL-1075, JAL-1061, JAL-1064 - introduced second tier...
2012-04-24 jprocterJAL-1064 sequence database sources are stored and retri...
2012-04-24 jprocterJAL-972 correct das registry default URL (JDAS automati...
2012-04-24 jprocterJAL-972 - test to distinguish sources based on age...
2012-04-24 jprocterJAL-1074 fix - missing tag indicating alignments are...
2012-04-20 jprocterJAL-972, JAL-1072 new default dasregistry.org registry...
2012-04-20 jprocterJAL-1064 JAL-671 - add tree based database dialog as...
2012-04-20 jprocterJAL-1064 - hack to create menu item label for each...
2012-04-20 jprocterJAL-1064 - refactor to iterate over many sources associ...
2012-04-20 jprocterJAL-972 - correct name when constructing db-source...
2012-04-20 jprocter(JAL-1071) hacked the square matrix that stores the...
2012-04-11 jprocterdialog for browsing and selecting datasources hierarchi...
2012-03-30 jprocterJAL-1062 - recognise and split off the range qualifier...
2012-03-30 jprocter(JAL-972) format tweak for source information box
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
2012-03-30 jprocter(JAL-972) jdas latest build
2012-03-30 jprocterlogic bug
2012-03-28 jprocterJAL-893 JAL-842 - updated VARNA - fix typo in InstallAn...
2012-03-28 jprocterMerge branch 'JAL-976_jabaws2supp' into develop
2012-03-28 jprocterJAL-1060 - prototype GUI with traffic light coding...
2012-03-28 jprocterJAL-1060 - record which services are invalid, valid...
2012-03-27 jprocterformatting
2012-03-27 jprocterJAL-976 - tweak web services gui so empty menus don...
2012-03-27 jprocter(JAL-976) - consistent ordering of services according...
2012-03-27 jprocterJAL-976 - hack to provide consistent ordering of JABAWS...
2012-03-27 jprocter(JAL-976) refactor JABAWS1 list
2012-03-05 jprocter(JAL-942) comment out non-functional buttons in VARNA
2012-03-05 jprocter(JAL-942) clearer view structure menu entry
2012-03-05 jprocterJAL-942 - sensible name on window
2012-03-05 jprocterJAL-942 - make sure rna structures get a sensible name
2012-03-02 jprocter(JAL-1052) todo for output of RNA consensus lines
2012-03-02 jprocter(JAL-1052) basic consensus line parsing to rna structur...
2012-03-02 jprocter(JAL-1052) make RNA secondary structure string parsing...
2012-03-02 jprocterformatting
2012-03-02 jprocter(JAL-942) more tweaking mapping between 2-struct and...
2012-03-02 jprocter(JAL-842) debug mouseover for sequences that don't...
2012-03-02 jprocter(JAL-842) todo
2012-03-02 jprocterremove unnecessary method
2012-03-02 jprocterefficiency, and ensure mouseover messages originating...
2012-03-01 jprocter(JAL-842) ensure deletions are accounted for when highl...
2012-03-01 jprocter(JAL-893) update to VARNAv3.9-dev version
next