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jalview.git
2012-06-07 jprocterJAL-976 ensure job id gets written out if there's an... commit | commitdiff | tree | snapshot
2012-06-04 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-05-31 jprocterjavatidy commit | commitdiff | tree | snapshot
2012-05-31 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI... commit | commitdiff | tree | snapshot
2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by... commit | commitdiff | tree | snapshot
2012-05-30 jprocterupdated schema to store and recover belowAlignment... commit | commitdiff | tree | snapshot
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... commit | commitdiff | tree | snapshot
2012-05-30 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-30 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-24 jprocterTODO: JAL-1108 commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1078 - removed 'Load Score File' menu item and... commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added... commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so... commit | commitdiff | tree | snapshot
2012-05-24 jproctertodo: JAL-1105 commit | commitdiff | tree | snapshot
2012-05-24 jproctertodo: JAL-1108 commit | commitdiff | tree | snapshot
2012-05-24 jprocterensure annotation isn't added twice - note - this could... commit | commitdiff | tree | snapshot
2012-05-24 jprocterJAL-1107 - documentation explaining '*' and '+' in... commit | commitdiff | tree | snapshot
2012-05-24 jprocterpatch for occasional NPE when applet is quit commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1067 report any warning messages to user commit | commitdiff | tree | snapshot
2012-05-23 jprocterTODO for JAL-976 commit | commitdiff | tree | snapshot
2012-05-23 jproctertodo for JAL-1106 commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried... commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-1102 todos and status updates when data is added commit | commitdiff | tree | snapshot
2012-05-23 jproctertodo JAL-1104 : functions to refactor commit | commitdiff | tree | snapshot
2012-05-23 jproctertodo: blocked by JAL-1104 commit | commitdiff | tree | snapshot
2012-05-23 jprocterJAL-958 - ensure logo is rendered even if consensus... commit | commitdiff | tree | snapshot
2012-05-22 jprocterupdate the copy constructor commit | commitdiff | tree | snapshot
2012-05-22 jprocterJAL-1065,JAL-1066 propagated notification of coloursche... commit | commitdiff | tree | snapshot
2012-05-22 jprocterJAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3... commit | commitdiff | tree | snapshot
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... commit | commitdiff | tree | snapshot
2012-05-16 jprocterwarning dialog - fixes JAL-1099 commit | commitdiff | tree | snapshot
2012-05-16 jprocterfixed JAL-1086: pass column index so colourscheme profi... commit | commitdiff | tree | snapshot
2012-05-16 jprocterJAL-958 - don't try to draw all zero profiles commit | commitdiff | tree | snapshot
2012-05-16 jprocterJAL-958 JAL-1086 formatting and remove old code commit | commitdiff | tree | snapshot
2012-05-14 jprocterpack before displaying splashscreen to ensure its prefe... commit | commitdiff | tree | snapshot
2012-05-14 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-14 jprocterJAL-1097 - ensure replace comma for semicolon always... commit | commitdiff | tree | snapshot
2012-05-14 jprocterMerge branch 'JAL-972-jdas' into develop commit | commitdiff | tree | snapshot
2012-05-14 jprocterJAL-1075 commit | commitdiff | tree | snapshot
2012-05-14 jprocterJAL-1061,JAL-1075 - first pass at implementing sequence... commit | commitdiff | tree | snapshot
2012-05-14 jprocterclean up old commented code commit | commitdiff | tree | snapshot
2012-05-14 jprocterJAL-1095 - todo commit | commitdiff | tree | snapshot
2012-05-14 jprocterjavadoc commit | commitdiff | tree | snapshot
2012-05-11 jprocterJAL-972 workaround for working out source URL for pre... commit | commitdiff | tree | snapshot
2012-05-11 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-11 jprocterJAL-972 migration from dasobert to jdas registry URLs commit | commitdiff | tree | snapshot
2012-05-11 jprocterJAL-972 local do not have a coordsys element with sourc... commit | commitdiff | tree | snapshot
2012-05-11 jprocterJAL-424 TODO: new method signature for local source... commit | commitdiff | tree | snapshot
2012-05-10 jprocterJAL-1085 - ensure sequence fetching client waits around... commit | commitdiff | tree | snapshot
2012-05-10 jprocterJAL-972 JAL-1084 propagate reference to local authentic... commit | commitdiff | tree | snapshot
2012-05-10 jprocterJAL-1083 - graceful failover to single ID query mode... commit | commitdiff | tree | snapshot
2012-05-10 jprocterformatting commit | commitdiff | tree | snapshot
2012-05-10 jprocterJAL-1083 graceful failover to one ID per sequences... commit | commitdiff | tree | snapshot
2012-05-10 jprocterJAL-1075 better layout and info box for source browser commit | commitdiff | tree | snapshot
2012-05-01 jprocterJAL-1075 tweak layout and test display for tree based... commit | commitdiff | tree | snapshot
2012-04-24 jprocterJAL-1075, JAL-1061, JAL-1064 - introduced second tier... commit | commitdiff | tree | snapshot
2012-04-24 jprocterJAL-1064 sequence database sources are stored and retri... commit | commitdiff | tree | snapshot
2012-04-24 jprocterJAL-972 correct das registry default URL (JDAS automati... commit | commitdiff | tree | snapshot
2012-04-24 jprocterJAL-972 - test to distinguish sources based on age... commit | commitdiff | tree | snapshot
2012-04-24 jprocterJAL-1074 fix - missing tag indicating alignments are... commit | commitdiff | tree | snapshot
2012-04-20 jprocterJAL-972, JAL-1072 new default dasregistry.org registry... commit | commitdiff | tree | snapshot
2012-04-20 jprocterJAL-1064 JAL-671 - add tree based database dialog as... commit | commitdiff | tree | snapshot
2012-04-20 jprocterJAL-1064 - hack to create menu item label for each... commit | commitdiff | tree | snapshot
2012-04-20 jprocterJAL-1064 - refactor to iterate over many sources associ... commit | commitdiff | tree | snapshot
2012-04-20 jprocterJAL-972 - correct name when constructing db-source... commit | commitdiff | tree | snapshot
2012-04-20 jprocter(JAL-1071) hacked the square matrix that stores the... commit | commitdiff | tree | snapshot
2012-04-11 jprocterdialog for browsing and selecting datasources hierarchi... commit | commitdiff | tree | snapshot
2012-03-30 jprocterJAL-1062 - recognise and split off the range qualifier... commit | commitdiff | tree | snapshot
2012-03-30 jprocter(JAL-972) format tweak for source information box commit | commitdiff | tree | snapshot
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972... commit | commitdiff | tree | snapshot
2012-03-30 jprocter(JAL-972) jdas latest build commit | commitdiff | tree | snapshot
2012-03-30 jprocterlogic bug commit | commitdiff | tree | snapshot
2012-03-28 jprocterJAL-893 JAL-842 - updated VARNA - fix typo in InstallAn... commit | commitdiff | tree | snapshot
2012-03-28 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2012-03-28 jprocterJAL-1060 - prototype GUI with traffic light coding... commit | commitdiff | tree | snapshot
2012-03-28 jprocterJAL-1060 - record which services are invalid, valid... commit | commitdiff | tree | snapshot
2012-03-27 jprocterformatting commit | commitdiff | tree | snapshot
2012-03-27 jprocterJAL-976 - tweak web services gui so empty menus don... commit | commitdiff | tree | snapshot
2012-03-27 jprocter(JAL-976) - consistent ordering of services according... commit | commitdiff | tree | snapshot
2012-03-27 jprocterJAL-976 - hack to provide consistent ordering of JABAWS... commit | commitdiff | tree | snapshot
2012-03-27 jprocter(JAL-976) refactor JABAWS1 list commit | commitdiff | tree | snapshot
2012-03-05 jprocter(JAL-942) comment out non-functional buttons in VARNA commit | commitdiff | tree | snapshot
2012-03-05 jprocter(JAL-942) clearer view structure menu entry commit | commitdiff | tree | snapshot
2012-03-05 jprocterJAL-942 - sensible name on window commit | commitdiff | tree | snapshot
2012-03-05 jprocterJAL-942 - make sure rna structures get a sensible name commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-1052) todo for output of RNA consensus lines commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-1052) basic consensus line parsing to rna structur... commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-1052) make RNA secondary structure string parsing... commit | commitdiff | tree | snapshot
2012-03-02 jprocterformatting commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-942) more tweaking mapping between 2-struct and... commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-842) debug mouseover for sequences that don't... commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-842) todo commit | commitdiff | tree | snapshot
2012-03-02 jprocterremove unnecessary method commit | commitdiff | tree | snapshot
2012-03-02 jprocterefficiency, and ensure mouseover messages originating... commit | commitdiff | tree | snapshot
2012-03-01 jprocter(JAL-842) ensure deletions are accounted for when highl... commit | commitdiff | tree | snapshot
2012-03-01 jprocter(JAL-893) update to VARNAv3.9-dev version commit | commitdiff | tree | snapshot
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