jalview.git
2015-03-26 tcofoegbuModified BioJsHTMLOutputTest to test specific json...
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into Release_2_...
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to...
2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim Procterreassign features already created/documented for 2...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7...
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath...
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources bug/JAL-1643_File-chooser-improvement
2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into...
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions...
2015-02-27 Jim Procterfix for JAL-1678
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes
2015-02-12 Jim ProcterJAL-1350 document changed behaviour
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected...
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using...
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup
2015-02-12 Jim ProcterJAL-1115 typecast
2015-02-12 Jim Procterjavadoc
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-02-05 Charles Ofoegbumerge commit
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and...
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries...
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL...
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default...
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more...
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement...
2015-02-02 Charles OfoegbuJAL-1644 added null check for sequence description...
2015-02-02 Charles OfoegbuMerge commit
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag...
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement...
2015-02-02 Charles OfoegbuJAL-1644 improvment of finder logic to include the...
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque...
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToR...
2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature...
2015-01-27 gmungocJAL-1588 new class renamed
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session...
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface
2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into...
2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now...
2015-01-23 Jim ProcterJAL-1551 formatting
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
2015-01-23 Jim ProcterJAL-1551 crlf changes
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki...
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
2015-01-23 Jim ProcterJAL-1551 formatting/imports
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-23 Charles OfoegbuMerge branch 'develop' of https://source.jalview.org...
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv...
2015-01-23 Jim ProcterJAL-1551 source code formatting
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-22 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_I...
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles Ofoegbuclean up
2015-01-20 Charles Ofoegbuclean up
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles OfoegbuFurther abstractions and clean up
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles Ofoegbubasic house keeping
2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structu...
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select...
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative...
2015-01-18 Jim ProcterJAL-1628 formatting
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
2015-01-18 Jim Procteralways use interface rather than field access
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save...
2015-01-14 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
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