--- /dev/null
+package jalview.appletgui;
+
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.ColumnSelection;
+import jalview.gui.JvSwingUtils;
+import jalview.schemes.AnnotationColourGradient;
+import jalview.util.MessageManager;
+import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
+
+import java.awt.BorderLayout;
+import java.awt.CardLayout;
+import java.awt.Checkbox;
+import java.awt.Choice;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.Frame;
+import java.awt.Panel;
+import java.awt.TextField;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.AdjustmentEvent;
+import java.awt.event.AdjustmentListener;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.TextEvent;
+import java.awt.event.TextListener;
+import java.util.Iterator;
+import java.util.Vector;
+
+import net.miginfocom.swing.MigLayout;
+
+public class AnnotationColumnChooser extends AnnotationRowFilter implements
+ ActionListener, AdjustmentListener, ItemListener, MouseListener
+{
+
+ private Choice annotations = new Choice();
+
+ private Panel actionPanel = new Panel();
+
+ private TitledPanel thresholdPanel = new TitledPanel();
+
+ private Panel switchableViewsPanel = new Panel(new CardLayout());
+
+ private CardLayout switchableViewsLayout = (CardLayout) (switchableViewsPanel
+ .getLayout());
+
+ private Panel noGraphFilterView = new Panel();
+
+ private Panel graphFilterView = new Panel();
+
+ private Panel annotationComboBoxPanel = new Panel();
+
+ private BorderLayout borderLayout1 = new BorderLayout();
+
+ private Choice threshold = new Choice();
+
+ private StructureFilterPanel gStructureFilterPanel;
+
+ private StructureFilterPanel ngStructureFilterPanel;
+
+ private StructureFilterPanel currentStructureFilterPanel;
+
+ private SearchPanel currentSearchPanel;
+
+ private SearchPanel gSearchPanel;
+
+ private SearchPanel ngSearchPanel;
+
+ private FurtherActionPanel currentFurtherActionPanel;
+
+ private FurtherActionPanel gFurtherActionPanel;
+
+ private FurtherActionPanel ngFurtherActionPanel;
+
+ public static final int ACTION_OPTION_SELECT = 1;
+
+ public static int ACTION_OPTION_HIDE = 2;
+
+ public static String NO_GRAPH_VIEW = "0";
+
+ public static String GRAPH_VIEW = "1";
+
+ private int actionOption = ACTION_OPTION_SELECT;
+
+ private ColumnSelection oldColumnSelection;
+
+ public AnnotationColumnChooser()
+ {
+ try
+ {
+ jbInit();
+ } catch (Exception ex)
+ {
+ ex.printStackTrace();
+ }
+ }
+
+ public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
+ {
+ super(av, ap);
+ frame = new Frame();
+ frame.add(this);
+ jalview.bin.JalviewLite.addFrame(frame,
+ MessageManager.getString("label.select_by_annotation"), 520,
+ 215);
+
+ slider.addAdjustmentListener(this);
+ slider.addMouseListener(this);
+
+ if (av.getAlignment().getAlignmentAnnotation() == null)
+ {
+ return;
+ }
+ setOldColumnSelection(av.getColumnSelection());
+ adjusting = true;
+ Vector list = new Vector();
+ int index = 1;
+ for (int i = 0; i < av.getAlignment().getAlignmentAnnotation().length; i++)
+ {
+ String label = av.getAlignment().getAlignmentAnnotation()[i].label;
+ if (!list.contains(label))
+ {
+ list.addElement(label);
+ }
+ else
+ {
+ list.addElement(label + "_" + (index++));
+ }
+ }
+
+ for (int i = 0; i < list.size(); i++)
+ {
+ annotations.addItem(list.elementAt(i).toString());
+ }
+
+ populateThresholdComboBox(threshold);
+
+ // restore Object state from the previous session if one exists
+ if (av.getAnnotationColumnSelectionState() != null)
+ {
+ currentSearchPanel = av.getAnnotationColumnSelectionState()
+ .getCurrentSearchPanel();
+ currentStructureFilterPanel = av.getAnnotationColumnSelectionState()
+ .getCurrentStructureFilterPanel();
+ annotations.select(av.getAnnotationColumnSelectionState()
+ .getAnnotations().getSelectedIndex());
+ threshold.select(av.getAnnotationColumnSelectionState()
+ .getThreshold().getSelectedIndex());
+ actionOption = av.getAnnotationColumnSelectionState()
+ .getActionOption();
+ }
+
+ try
+ {
+ jbInit();
+ } catch (Exception ex)
+ {
+ }
+ adjusting = false;
+
+ updateView();
+ frame.invalidate();
+ frame.pack();
+ }
+
+ private void jbInit() throws Exception
+ {
+ ok.setLabel(MessageManager.getString("action.ok"));
+
+ cancel.setLabel(MessageManager.getString("action.cancel"));
+
+ thresholdValue.setEnabled(false);
+ thresholdValue.setColumns(7);
+
+ ok.addActionListener(this);
+ cancel.addActionListener(this);
+ annotations.addItemListener(this);
+ thresholdValue.addActionListener(this);
+ threshold.addItemListener(this);
+
+ slider.setBackground(Color.white);
+ slider.setEnabled(false);
+ slider.setPreferredSize(new Dimension(100, 32));
+
+ thresholdPanel.setBackground(Color.white);
+ thresholdPanel.setFont(JvSwingUtils.getLabelFont());
+ thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]"));
+
+ actionPanel.setBackground(Color.white);
+ actionPanel.setFont(JvSwingUtils.getLabelFont());
+
+ graphFilterView.setLayout(new MigLayout("", "[left][right]", "[][]"));
+ graphFilterView.setBackground(Color.white);
+
+ noGraphFilterView.setLayout(new MigLayout("", "[left][right]", "[][]"));
+ noGraphFilterView.setBackground(Color.white);
+
+ annotationComboBoxPanel.setBackground(Color.white);
+ annotationComboBoxPanel.setFont(JvSwingUtils.getLabelFont());
+
+ gSearchPanel = new SearchPanel(this);
+ ngSearchPanel = new SearchPanel(this);
+ gFurtherActionPanel = new FurtherActionPanel(this);
+ ngFurtherActionPanel = new FurtherActionPanel(this);
+ gStructureFilterPanel = new StructureFilterPanel(this);
+ ngStructureFilterPanel = new StructureFilterPanel(this);
+
+ thresholdPanel.setTitle("Threshold Filter");
+ thresholdPanel.add(getThreshold(), "grow");
+ thresholdPanel.add(thresholdValue, "grow, wrap");
+ thresholdPanel.add(slider, "grow, span, wrap");
+
+ actionPanel.add(ok);
+ actionPanel.add(cancel);
+
+ graphFilterView.add(gSearchPanel, "grow, span, wrap");
+ graphFilterView.add(gStructureFilterPanel, "grow, span, wrap");
+ graphFilterView.add(thresholdPanel, "grow, span, wrap");
+ graphFilterView.add(gFurtherActionPanel);
+
+ noGraphFilterView.add(ngSearchPanel, "grow, span, wrap");
+ noGraphFilterView.add(ngStructureFilterPanel, "grow, span, wrap");
+ noGraphFilterView.add(ngFurtherActionPanel);
+
+ annotationComboBoxPanel.add(getAnnotations());
+ switchableViewsPanel.add(noGraphFilterView,
+ AnnotationColumnChooser.NO_GRAPH_VIEW);
+ switchableViewsPanel.add(graphFilterView,
+ AnnotationColumnChooser.GRAPH_VIEW);
+
+ this.setLayout(borderLayout1);
+ this.add(annotationComboBoxPanel, java.awt.BorderLayout.PAGE_START);
+ this.add(switchableViewsPanel, java.awt.BorderLayout.CENTER);
+ this.add(actionPanel, java.awt.BorderLayout.SOUTH);
+
+ selectedAnnotationChanged();
+ this.validate();
+ }
+
+ @SuppressWarnings("unchecked")
+ public void reset()
+ {
+ if (this.getOldColumnSelection() != null)
+ {
+ av.getColumnSelection().clear();
+
+ if (av.getAnnotationColumnSelectionState() != null)
+ {
+ ColumnSelection oldSelection = av
+ .getAnnotationColumnSelectionState()
+ .getOldColumnSelection();
+ if (oldSelection != null && oldSelection.getHiddenColumns() != null
+ && !oldSelection.getHiddenColumns().isEmpty())
+ {
+ for (Iterator<int[]> itr = oldSelection.getHiddenColumns()
+ .iterator(); itr.hasNext();)
+ {
+ int positions[] = itr.next();
+ av.hideColumns(positions[0], positions[1]);
+ }
+ }
+ av.setColumnSelection(oldSelection);
+ }
+ ap.paintAlignment(true);
+ }
+
+ }
+
+ public void adjustmentValueChanged(AdjustmentEvent evt)
+ {
+ if (!adjusting)
+ {
+ thresholdValue.setText((slider.getValue() / 1000f) + "");
+ valueChanged(!sliderDragging);
+ }
+ }
+
+ protected void addSliderMouseListeners()
+ {
+
+ slider.addMouseListener(new MouseAdapter()
+ {
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ sliderDragging = true;
+ super.mousePressed(e);
+ }
+
+ @Override
+ public void mouseDragged(MouseEvent e)
+ {
+ sliderDragging = true;
+ super.mouseDragged(e);
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent evt)
+ {
+ if (sliderDragging)
+ {
+ sliderDragging = false;
+ valueChanged(true);
+ }
+ ap.paintAlignment(true);
+ }
+ });
+ }
+
+ public void valueChanged(boolean updateAllAnnotation)
+ {
+ if (slider.isEnabled())
+ {
+ getCurrentAnnotation().threshold.value = slider.getValue() / 1000f;
+ updateView();
+ ap.paintAlignment(false);
+ }
+ }
+
+ public Choice getThreshold()
+ {
+ return threshold;
+ }
+
+ public void setThreshold(Choice threshold)
+ {
+ this.threshold = threshold;
+ }
+
+ public Choice getAnnotations()
+ {
+ return annotations;
+ }
+
+ public void setAnnotations(Choice annotations)
+ {
+ this.annotations = annotations;
+ }
+
+ @Override
+ public void updateView()
+ {
+ // Check if combobox is still adjusting
+ if (adjusting)
+ {
+ return;
+ }
+
+ AnnotationFilterParameter filterParams = new AnnotationFilterParameter();
+ setCurrentAnnotation(av.getAlignment().getAlignmentAnnotation()[getAnnotations()
+ .getSelectedIndex()]);
+
+ int selectedThresholdItem = getSelectedThresholdItem(getThreshold()
+ .getSelectedIndex());
+
+ slider.setEnabled(true);
+ thresholdValue.setEnabled(true);
+
+ if (selectedThresholdItem == AnnotationColourGradient.NO_THRESHOLD)
+ {
+ slider.setEnabled(false);
+ thresholdValue.setEnabled(false);
+ thresholdValue.setText("");
+ // build filter params
+ }
+ else if (selectedThresholdItem != AnnotationColourGradient.NO_THRESHOLD)
+ {
+ if (getCurrentAnnotation().threshold == null)
+ {
+ getCurrentAnnotation()
+ .setThreshold(
+ new jalview.datamodel.GraphLine(
+ (getCurrentAnnotation().graphMax - getCurrentAnnotation().graphMin) / 2f,
+ "Threshold", Color.black));
+ }
+
+ adjusting = true;
+ float range = getCurrentAnnotation().graphMax * 1000
+ - getCurrentAnnotation().graphMin * 1000;
+
+ slider.setMinimum((int) (getCurrentAnnotation().graphMin * 1000));
+ slider.setMaximum((int) (getCurrentAnnotation().graphMax * 1000));
+ slider.setValue((int) (getCurrentAnnotation().threshold.value * 1000));
+ thresholdValue.setText(getCurrentAnnotation().threshold.value + "");
+ // slider.setMajorTickSpacing((int) (range / 10f));
+ slider.setEnabled(true);
+ thresholdValue.setEnabled(true);
+ adjusting = false;
+
+ // build filter params
+ filterParams
+ .setThresholdType(AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
+ if (getCurrentAnnotation().graph != AlignmentAnnotation.NO_GRAPH)
+ {
+ filterParams
+ .setThresholdValue(getCurrentAnnotation().threshold.value);
+
+ if (selectedThresholdItem == AnnotationColourGradient.ABOVE_THRESHOLD)
+ {
+ filterParams
+ .setThresholdType(AnnotationFilterParameter.ThresholdType.ABOVE_THRESHOLD);
+ }
+ else if (selectedThresholdItem == AnnotationColourGradient.BELOW_THRESHOLD)
+ {
+ filterParams
+ .setThresholdType(AnnotationFilterParameter.ThresholdType.BELOW_THRESHOLD);
+ }
+ }
+ }
+
+ if (currentStructureFilterPanel != null)
+ {
+ if (currentStructureFilterPanel.alphaHelix.getState())
+ {
+ filterParams.setFilterAlphaHelix(true);
+ }
+ if (currentStructureFilterPanel.betaStrand.getState())
+ {
+ filterParams.setFilterBetaSheet(true);
+ }
+ if (currentStructureFilterPanel.turn.getState())
+ {
+ filterParams.setFilterTurn(true);
+ }
+ }
+
+ if (currentSearchPanel != null)
+ {
+
+ if (!currentSearchPanel.searchBox.getText().isEmpty())
+ {
+ currentSearchPanel.description.setEnabled(true);
+ currentSearchPanel.displayName.setEnabled(true);
+ filterParams.setRegexString(currentSearchPanel.searchBox.getText());
+ if (currentSearchPanel.displayName.getState())
+ {
+ filterParams
+ .addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DISPLAY_STRING);
+ }
+ if (currentSearchPanel.description.getState())
+ {
+ filterParams
+ .addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DESCRIPTION);
+ }
+ }
+ else
+ {
+ currentSearchPanel.description.setEnabled(false);
+ currentSearchPanel.displayName.setEnabled(false);
+ }
+ }
+
+ av.getColumnSelection().filterAnnotations(
+ getCurrentAnnotation().annotations, filterParams);
+
+ av.showAllHiddenColumns();
+ if (getActionOption() == ACTION_OPTION_HIDE)
+ {
+ av.hideSelectedColumns();
+ }
+
+ filterParams = null;
+ av.setAnnotationColumnSelectionState(this);
+ ap.paintAlignment(true);
+ }
+
+ public ColumnSelection getOldColumnSelection()
+ {
+ return oldColumnSelection;
+ }
+
+ public void setOldColumnSelection(ColumnSelection currentColumnSelection)
+ {
+ if (currentColumnSelection != null)
+ {
+ this.oldColumnSelection = new ColumnSelection(currentColumnSelection);
+ }
+ }
+
+ public FurtherActionPanel getCurrentFutherActionPanel()
+ {
+ return currentFurtherActionPanel;
+ }
+
+ public void setCurrentFutherActionPanel(
+ FurtherActionPanel currentFutherActionPanel)
+ {
+ this.currentFurtherActionPanel = currentFutherActionPanel;
+ }
+
+ public SearchPanel getCurrentSearchPanel()
+ {
+ return currentSearchPanel;
+ }
+
+ public void setCurrentSearchPanel(SearchPanel currentSearchPanel)
+ {
+ this.currentSearchPanel = currentSearchPanel;
+ }
+
+ public int getActionOption()
+ {
+ return actionOption;
+ }
+
+ public void setActionOption(int actionOption)
+ {
+ this.actionOption = actionOption;
+ }
+
+ public StructureFilterPanel getCurrentStructureFilterPanel()
+ {
+ return currentStructureFilterPanel;
+ }
+
+ public void setCurrentStructureFilterPanel(
+ StructureFilterPanel currentStructureFilterPanel)
+ {
+ this.currentStructureFilterPanel = currentStructureFilterPanel;
+ }
+
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ if (e.getSource() == annotations)
+ {
+ selectedAnnotationChanged();
+ }
+ else if (e.getSource() == threshold)
+ {
+ threshold_actionPerformed(null);
+ }
+ }
+
+ public void selectedAnnotationChanged()
+ {
+ String currentView = AnnotationColumnChooser.NO_GRAPH_VIEW;
+ if (av.getAlignment().getAlignmentAnnotation()[getAnnotations()
+ .getSelectedIndex()].graph != AlignmentAnnotation.NO_GRAPH)
+ {
+ currentView = AnnotationColumnChooser.GRAPH_VIEW;
+ }
+
+ gSearchPanel.syncState();
+ gFurtherActionPanel.syncState();
+ gStructureFilterPanel.syncState();
+
+ ngSearchPanel.syncState();
+ ngFurtherActionPanel.syncState();
+ ngStructureFilterPanel.syncState();
+
+ switchableViewsLayout.show(switchableViewsPanel, currentView);
+ updateView();
+ }
+
+ public class FurtherActionPanel extends Panel implements
+ ItemListener
+ {
+ private AnnotationColumnChooser aColChooser;
+
+ private Choice furtherAction = new Choice();
+
+ public FurtherActionPanel(AnnotationColumnChooser aColChooser)
+ {
+ this.aColChooser = aColChooser;
+ furtherAction.addItem("Select");
+ furtherAction.addItem("Hide");
+ furtherAction.addItemListener(this);
+ syncState();
+
+ // this.setTitle("Filter Actions");
+ // this.setFont(JvSwingUtils.getLabelFont());
+
+ this.add(furtherAction);
+ }
+
+ public void syncState()
+ {
+ if (aColChooser.getActionOption() == AnnotationColumnChooser.ACTION_OPTION_HIDE)
+ {
+ furtherAction.select("Hide");
+ }
+ else
+ {
+ furtherAction.select("Select");
+ }
+ }
+
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ aColChooser.setCurrentFutherActionPanel(this);
+ if (furtherAction.getSelectedItem().equalsIgnoreCase("Select"))
+ {
+ setActionOption(ACTION_OPTION_SELECT);
+ updateView();
+ }
+ else
+ {
+ setActionOption(ACTION_OPTION_HIDE);
+ updateView();
+ }
+
+ }
+ }
+
+ public class StructureFilterPanel extends TitledPanel implements
+ ItemListener
+ {
+ private AnnotationColumnChooser aColChooser;
+
+ private Checkbox alphaHelix = new Checkbox();
+
+ private Checkbox betaStrand = new Checkbox();
+
+ private Checkbox turn = new Checkbox();
+
+ private Checkbox all = new Checkbox();
+
+ public StructureFilterPanel(AnnotationColumnChooser aColChooser)
+ {
+ this.aColChooser = aColChooser;
+
+ alphaHelix.setLabel(MessageManager.getString("label.alpha_helix"));
+ alphaHelix.setBackground(Color.white);
+
+ alphaHelix.addItemListener(this);
+
+ betaStrand.setLabel(MessageManager.getString("label.beta_strand"));
+ betaStrand.setBackground(Color.white);
+ betaStrand.addItemListener(this);
+
+ turn.setLabel(MessageManager.getString("label.turn"));
+ turn.setBackground(Color.white);
+ turn.addItemListener(this);
+
+ all.setLabel(MessageManager.getString("label.select_all"));
+ all.setBackground(Color.white);
+ all.addItemListener(this);
+
+ this.setBackground(Color.white);
+ this.setTitle("Structure Filter");
+ this.setFont(JvSwingUtils.getLabelFont());
+
+ this.add(all);
+ this.add(alphaHelix);
+ this.add(betaStrand);
+ this.add(turn);
+ }
+
+ public void alphaHelix_actionPerformed()
+ {
+ updateSelectAllState();
+ aColChooser.setCurrentStructureFilterPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void betaStrand_actionPerformed()
+ {
+ updateSelectAllState();
+ aColChooser.setCurrentStructureFilterPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void turn_actionPerformed()
+ {
+ updateSelectAllState();
+ aColChooser.setCurrentStructureFilterPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void all_actionPerformed()
+ {
+ if (all.getState())
+ {
+ alphaHelix.setState(true);
+ betaStrand.setState(true);
+ turn.setState(true);
+ }
+ else
+ {
+ alphaHelix.setState(false);
+ betaStrand.setState(false);
+ turn.setState(false);
+ }
+ aColChooser.setCurrentStructureFilterPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void updateSelectAllState()
+ {
+ if (alphaHelix.getState() && betaStrand.getState() && turn.getState())
+ {
+ all.setState(true);
+ }
+ else
+ {
+ all.setState(false);
+ }
+ }
+
+ public void syncState()
+ {
+ StructureFilterPanel sfp = aColChooser
+ .getCurrentStructureFilterPanel();
+ if (sfp != null)
+ {
+ alphaHelix.setState(sfp.alphaHelix.getState());
+ betaStrand.setState(sfp.betaStrand.getState());
+ turn.setState(sfp.turn.getState());
+ if (sfp.all.getState())
+ {
+ all.setState(true);
+ alphaHelix.setState(true);
+ betaStrand.setState(true);
+ turn.setState(true);
+ }
+ }
+
+ }
+
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ if (e.getSource() == alphaHelix)
+ {
+ alphaHelix_actionPerformed();
+ }
+ else if (e.getSource() == betaStrand)
+ {
+ betaStrand_actionPerformed();
+ }
+ else if (e.getSource() == turn)
+ {
+ turn_actionPerformed();
+ }
+ else if (e.getSource() == all)
+ {
+ all_actionPerformed();
+ }
+ }
+ }
+
+ public class SearchPanel extends TitledPanel implements ItemListener
+ {
+ private AnnotationColumnChooser aColChooser;
+
+ private Checkbox displayName = new Checkbox();
+
+ private Checkbox description = new Checkbox();
+
+ private TextField searchBox = new TextField(10);
+
+ public SearchPanel(AnnotationColumnChooser aColChooser)
+ {
+
+ this.aColChooser = aColChooser;
+ searchBox.addTextListener(new TextListener()
+ {
+
+ @Override
+ public void textValueChanged(TextEvent e)
+ {
+ searchStringAction();
+
+ }
+
+ });
+
+ displayName.setLabel(MessageManager.getString("label.display_name"));
+ displayName.setEnabled(false);
+ displayName.addItemListener(this);
+
+ description.setLabel(MessageManager.getString("label.description"));
+ description.setEnabled(false);
+ description.addItemListener(this);
+ this.setTitle("Search Filter");
+ this.setFont(JvSwingUtils.getLabelFont());
+
+ syncState();
+ this.add(searchBox);
+ this.add(displayName);
+ this.add(description);
+ }
+
+ public void displayNameCheckboxAction()
+ {
+ aColChooser.setCurrentSearchPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void discriptionCheckboxAction()
+ {
+ aColChooser.setCurrentSearchPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void searchStringAction()
+ {
+ aColChooser.setCurrentSearchPanel(this);
+ aColChooser.updateView();
+ }
+
+ public void syncState()
+ {
+ SearchPanel sp = aColChooser.getCurrentSearchPanel();
+ if (sp != null)
+ {
+ description.setEnabled(sp.description.isEnabled());
+ description.setState(sp.description.getState());
+
+ displayName.setEnabled(sp.displayName.isEnabled());
+ displayName.setState(sp.displayName.getState());
+
+ searchBox.setText(sp.searchBox.getText());
+ }
+ }
+
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ if (e.getSource() == displayName)
+ {
+ displayNameCheckboxAction();
+ }
+ else if (e.getSource() == description)
+ {
+ discriptionCheckboxAction();
+ }
+
+ }
+ }
+
+ public void actionPerformed(ActionEvent evt)
+ {
+ if (evt.getSource() == thresholdValue)
+ {
+ try
+ {
+ float f = new Float(thresholdValue.getText()).floatValue();
+ slider.setValue((int) (f * 1000));
+ adjustmentValueChanged(null);
+ } catch (NumberFormatException ex)
+ {
+ }
+ }
+
+ else if (evt.getSource() == ok)
+ {
+ ok_actionPerformed(null);
+ }
+ else if (evt.getSource() == cancel)
+ {
+ cancel_actionPerformed(null);
+ }
+ else if (evt.getSource() == thresholdValue)
+ {
+ thresholdValue_actionPerformed(null);
+ }
+ else
+ {
+ updateView();
+ }
+ }
+
+ @Override
+ public void mouseClicked(MouseEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public void mousePressed(MouseEvent e)
+ {
+ if (e.getSource() == slider)
+ {
+ updateView();
+ }
+
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e)
+ {
+ if (e.getSource() == slider)
+ {
+ updateView();
+ }
+ }
+
+ @Override
+ public void mouseEntered(MouseEvent e)
+ {
+ if (e.getSource() == slider)
+ {
+ updateView();
+ }
+ }
+
+ @Override
+ public void mouseExited(MouseEvent e)
+ {
+ if (e.getSource() == slider)
+ {
+ updateView();
+ }
+ }
+
+}
git://source.jalview.org / jalview.git / commitdiff