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jalview.git
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects commit | commitdiff | tree | snapshot
2016-11-25 gmungocJAL-2344 correct roundtrip test to exclude Jalview... commit | commitdiff | tree | snapshot
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 exclude .class and .* files (install anywhere... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 applied BSD license for chimera/StrucViz2... commit | commitdiff | tree | snapshot
2016-11-24 gmungocFurther tweaks to get tests passing commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 apply license to new source files commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 update release date to next Tuesday commit | commitdiff | tree | snapshot
2016-11-24 gmungocFileFormatI further tweaks, clean compile commit | commitdiff | tree | snapshot
2016-11-24 Jim ProcterJAL-2325 tidy up release notes commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 remove 2.10.0 what’s new commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 latest release to 2.10 commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 Ctrl/Cmd/Alt modifiers and mention that B... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 hint about using the task switching key combin... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 mention Ctrl/Cmd/Alt modifiers and mention... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-1738 mention Ctrl or Cmd for toggle behaviour in... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 updated what’s new for 2.10.1 commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 reword ‘tame tooltip’ JAL-1723 release note commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 rejig authors and add Kira commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2282 JAL-2325 added link to help text from release... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 updated what’s new for 2.10.1 commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2282 revised docs about warning message. commit | commitdiff | tree | snapshot
2016-11-23 gmungocJAL-1738 Spanish versions added commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 JAL-2332 release notes commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 moved disulphide/contact bug fixes (JAL-2323... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 release notes formatting commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 release notes commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-23 Jim ProcterJAL-2325 release notes commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2197 changed tooltip for Jnet annotation rows to... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-2325 update release date for 2.10.1
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2016-11-22 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26 commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... commit | commitdiff | tree | snapshot
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 JAL-2118 2.10.0 patch in release note commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2335 failing test for FeatureRendererModel.findFeat... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2284 documentation for the new command-line option commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 post-document JAL-2284 released in 2.10.0 commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 release notes for JAL-2317 commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening... commit | commitdiff | tree | snapshot
2016-11-21 gmungocJAL-2333 test beefed up with gaps commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-1888 JAL-2325 release 2.9.0b1 notes updated post... commit | commitdiff | tree | snapshot
2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-1723 release notes and note in documentation about... commit | commitdiff | tree | snapshot
2016-11-21 Jim ProcterJAL-2325 update release 2.10.0 release notes for JAL... commit | commitdiff | tree | snapshot
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview commit | commitdiff | tree | snapshot
2016-11-18 Jim ProcterMerge branch 'bug/JAL-98consensusMemory' into develop commit | commitdiff | tree | snapshot
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... commit | commitdiff | tree | snapshot
2016-11-17 gmungocJAL-2327 add isContactFeature commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2325 release notes for 2.10.1 - pass one commit | commitdiff | tree | snapshot
2016-11-16 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... commit | commitdiff | tree | snapshot
2016-11-16 kiramtJAL-2282 Updated docs with information about when warni... bug/JAL-2282 commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... commit | commitdiff | tree | snapshot
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless... commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2318 revised documentation for above PID Threshold commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... commit | commitdiff | tree | snapshot
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping commit | commitdiff | tree | snapshot
2016-11-16 Jim ProcterJAL-2177 remove signature from desktop library Jmol jar commit | commitdiff | tree | snapshot
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... commit | commitdiff | tree | snapshot
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... commit | commitdiff | tree | snapshot
2016-11-11 Jim ProcterJAL-2177 remove Jmol project signature from jar so... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'bug/JAL-2317_jmol_chimera-chain-factorisa... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation commit | commitdiff | tree | snapshot
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 corrected search example to match AA propertie... commit | commitdiff | tree | snapshot
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... commit | commitdiff | tree | snapshot
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