jalview.git
2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'...
2016-11-22 Jim ProcterJAL-2325 update release date for 2.10.1

2016-11-22 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele...
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-11-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-22 tcofoegbuJAL-2322 added runnable interface to HTMLOutput class...
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to...
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for...
2016-11-21 Jim ProcterJAL-2325 JAL-2118 2.10.0 patch in release note
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into...
2016-11-21 Jim ProcterMerge branch 'develop' into documentation/JAL-2325_rele...
2016-11-21 Jim ProcterJAL-2284 documentation for the new command-line option
2016-11-21 Jim ProcterJAL-2325 post-document JAL-2284 released in 2.10.0
2016-11-21 Jim ProcterJAL-2325 release notes for JAL-2317
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening...
2016-11-21 Jim ProcterJAL-1888 JAL-2325 release 2.9.0b1 notes updated post...
2016-11-21 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into...
2016-11-21 Jim ProcterJAL-1723 release notes and note in documentation about...
2016-11-21 Jim ProcterJAL-2325 update release 2.10.0 release notes for JAL...
2016-11-18 Jim ProcterMerge branch 'bug/JAL-98consensusMemory' into develop
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very...
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to...
2016-11-16 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-11-16 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into...
2016-11-16 Jim ProcterJAL-2325 release notes for 2.10.1 - pass one
2016-11-16 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-16 kiramtJAL-2282 Updated docs with information about when warni... bug/JAL-2282
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless...
2016-11-16 Jim ProcterJAL-2318 revised documentation for above PID Threshold
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN...
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-16 gmungocJAL-2296 don't copy attribute with value False
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera...
2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera
2016-11-14 gmungocJAL-2296 parse Chimera atomspec to AtomSpec
2016-11-14 gmungocJAL-2296 report whether SequenceFeature actually added...
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-11-11 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and...
2016-11-11 gmungocJAL-2295 JAL-2269 JAL-2319 mockable SIFTS file, fix...
2016-11-11 gmungocJAL-2295 improved integrity of 'isFinishedInit' flag
2016-11-11 gmungocJAL-1270 corrected command-line args
2016-11-11 gmungocJAL-2295 set finishedInit to false before checking...
2016-11-11 gmungocJAL-2295 test that verifies transfer of features to...
2016-11-11 gmungocJAL-2295 sorted properties for readability
2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply
2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) !
2016-11-10 tcofoegbuMerge branch 'bug/JAL-2317_jmol_chimera-chain-factorisa...
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera...
2016-11-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of...
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-11-09 gmungocJAL-2295 set attributes commands include feature value...
2016-11-09 gmungocJAL-2295 single constant for "RESNUM" feature name
2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file...
2016-11-08 gmungocJAL-2301 corrected search example to match AA propertie...
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati...
2016-11-08 gmungocJAL-1961 added link to GFF3 format as well as GFF2
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to...
2016-11-08 gmungocJAL-2295 method added to return a compact mapped range...
2016-11-08 kiramtJAL-2309 Made test timeout slightly longer bug/JAL-2309
2016-11-08 kiramtJAL-2309 Adjusted timeout on headless tests
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera...
2016-11-08 gmungocJAL-2295 make RangeComparator a top level class for...
2016-11-08 tcofoegbuJAL-2280 Updated spanish translation as recommended...
2016-11-08 tcofoegbuJAL-2292 updated method calls
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation...
2016-11-07 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-07 gmungocJAL-1270 renamed helper method so it is not run as...
2016-11-07 gmungocJAL-2272 another test case
2016-11-07 gmungocJAL-1805 groups=Functional added where missing
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown
2016-11-07 gmungocJAL-2318 updated help text
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ...
2016-11-07 gmungocJAL-2295 handle no progress bar message properly
2016-11-07 gmungocJAL-2295 small tidy of javadoc only
2016-11-07 gmungocJAL-2295 (unoptimised) write Jalview features as Chimer...
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links...
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for...
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility...
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping
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