jalview.git
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group...
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature...
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to...
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end...
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into feature...
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for...
2017-05-24 gmungocJAL-2505 delete and readd modified feature after Cut...
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548...
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact...
2017-05-23 gmungocJAL-2490 unit tests for getFeaturesForGroup
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in...
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Feature...
2017-05-23 gmungocJAL-2480 methods to get features for group
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description
2017-05-22 gmungocJAL-2505 updates after conflicting merge of JAL-2504
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-22 gmungocJAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score
2017-05-22 gmungocJAL-2544 check feature overlaps selection region
2017-05-22 gmungocJAL-2543 identify as JSON before HTML
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct...
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior...
2017-05-22 gmungocJAL-2480 always include all non-positional features...
2017-05-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2256'...
2017-05-22 Jim ProcterJAL-2418 patch build - broken htsjdk import
2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition()
2017-05-19 gmungocJAL-2490 refactored test for 'hasFeatures'
2017-05-19 gmungocJAL-2544 only include features in selected columns...
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting
2017-05-19 gmungocJAL-2490 only count sequences where feature overlap...
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc
2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring
2017-05-18 Jim ProcterMerge branch 'bug/JAL-2388_typeCheckAlignView.getUpdate...
2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible...
2017-05-18 gmungocJAL-2490 lookup sequence features for "labelClass"
2017-05-18 gmungocJAL-2490 lookup features at each column position
2017-05-18 gmungocJAL-2543 html-encode quote characters in feature descri...
2017-05-18 gmungocJAL-2490 retrieve visible features only
2017-05-18 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-18 gmungocJAL-2541 initial unit tests for edit cut relocate features
2017-05-18 gmungocJAL-2541 fix to initSeqFrom (and minor code tidy);...
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256
2017-05-18 Jim ProcterJAL-2418 remove explicit test suite stats
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele...
2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop
2017-05-17 Jim ProcterJAL-2447 add links to issues.jalview.org for experiment...
2017-05-17 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-05-17 Jim ProcterJAL-2447 experimental section in ‘Whats New’
2017-05-17 Jim ProcterJAL-2447 JAL-2295 JAL-2296 documenting as experimental...
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele...
2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into...
2017-05-17 Jim ProcterJAL-2418 release notes
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature...
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures
2017-05-16 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-05-16 Jim ProcterJAL-2418 release notes
2017-05-16 Jim ProcterJAL-384 documentation on custom colours groovy examples
2017-05-16 gmungocJAL-2505 unreachable code (for many years) removed
2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved...
2017-05-16 Jim ProcterJAL-2418 release notes
2017-05-16 gmungocJAL-2505 refactored method removed
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceF...
2017-05-16 Jim ProcterJAL-2418 JAL-2316 added to new features
2017-05-16 Jim ProcterJAL-2316 tweaking docs and links in help
2017-05-16 Jim ProcterJAL-2418 release 2.10.2 release notes template
2017-05-16 Jim Procteralternative patch for JAL-2339 readability in java...
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of...
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-16 kiramtJAL-2522 Missed fix to applet
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat...
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to...
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated...
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation...
2017-05-15 gmungocJAL-2532 new feature types and colour changes from...
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore...
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie...
2017-05-15 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-05-15 kiramtJAL-2388 Add missed optimisation
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar...
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi...
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl...
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed
2017-05-15 gmungocJAL-2480 redundant code removed
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups...
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied...
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