jalview.git
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts...
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs...
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation...
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation...
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp...
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is...
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm...
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of...
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS...
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese...
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm...
2017-05-09 gmungocJAL-1632 correct i18n and NPE
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation
2017-05-08 gmungocJAL-1632 i18n for warning messages
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'...
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512
2017-05-08 kiramtJAL-2512 And applet
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour...
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque...
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient...
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc...
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types...
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota...
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions...
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat...
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into...
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row
2017-05-03 gmungocJAL-2246 test a Uniprot fetch
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value...
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when...
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value...
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox
2017-05-03 Jim ProcterJAL-2432 simplify code
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection...
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons...
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for...
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout
2017-05-02 gmungocJAL-1933 Spanish for Occupancy
2017-05-02 Jim ProcterJAL-2424 fixme’s removed
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising...
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d)
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop
2017-05-02 gmungocJAL-2499 inlined two 1-line methods
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-05-01 gmungocMerge remote-tracking branch
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter
2017-04-27 Jim ProcterJAL-1933 desktop documentation for show occupancy prefe...
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 action and label for occupancy
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties...
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA...
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line...
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy
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