jalview.git
2015-06-28 Jim ProcterJAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest
2015-06-26 Jim ProcterJAL-1705 basic client & tests for rest.ensembl.org...
2015-06-26 Jim ProcterJAL-1705 - allow a FileParse to be constructed directly...
2015-06-25 Jim ProcterJAL-1691 avoid NPE when original split frame has been...
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
2015-06-24 Jim ProcterMerge branch 'features/JAL-1370_patchshowunconserved...
2015-06-24 Jim ProcterJAL-1790 fix: javac.source=1.7 and javac.target=1.7...
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
2015-06-24 Jim ProcterMerge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
2015-06-23 Jim ProcterJAL-1780 JAL-653 jim forgot to put the conditional... merge/develop_JAL-1780_JAL-653_JAL-1892
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
2015-06-22 Jim ProcterJAL-1270 fix logic in stockholm test allowing annotatio...
2015-06-22 Jim ProcterJAL-653 JAL-1780 JAL-1140 added RNAML example alignment...
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil...
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow...
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-06-18 Jim ProcterJAL-653 patch broken test code - test still not passing
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about...
2015-06-18 Jim ProcterJAL-653 JAL-1780 javadoc for FeatureRenderer prior...
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out...
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa...
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export...
2015-06-17 Jim ProcterJAL-1783 add java 1.7 and 1.8 class numbers
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export...
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo...
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw...
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo...
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null...
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports)
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim ProcterJAL-1775 test demonstrating bug
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
2015-06-15 Jim ProcterMerge branch 'develop' into bug/JAL-1775
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed
2015-06-15 Jim ProcterJAL-1775 fix broken test due to missing file (RF0031_un...
2015-06-15 tcofoegbuJAL-1641 clean up
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface
2015-06-15 tcofoegbuclean up
2015-06-12 tcofoegbumerge
2015-06-12 tcofoegbuJAL-1627 removed extra spaces at end of tooltip
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 tcofoegbuupdated build.xml
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-10 gmungocMerge remote-tracking branch
2015-06-10 tcofoegbumerge
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute
2015-06-09 tcofoegbumerge commit
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in...
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this...
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame...
2015-06-07 Jim ProcterJAL-429 remove pointless code from phylip parser features/JAL-653_rebased_gffalignments
2015-06-07 Jim ProcterJAL-653 test for GFF file recognition and alignment...
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format...
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF...
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support...
2015-06-06 Jim ProcterJAL-653 gff version number field
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with...
2015-06-06 Jim ProcterJAL-653 missing imports after rebase
2015-06-06 Jim ProcterJAL-653 test for SequenceDummy methods
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes...
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into...
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed...
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped...
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on...
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta...
2015-06-05 gmungocJAL-1622 Chimera command timeout increased to 5 secs...
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional...
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ...
2015-06-05 gmungocJAL-1622 code tidy only, no functional change
2015-06-05 gmungocJAL-1749 correcting snafu in last commit
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret...
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local...
2015-06-05 Jim ProcterJAL-1551 formatting
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source...
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