git://source.jalview.org
/
jalview.git
/ shortlog
commit
grep
author
committer
pickaxe
?
search:
re
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
jalview.git
2023-10-22
James Procter
Merge branch 'patch/JAL-4298_synchronize_consoledoc...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-22
James Procter
Merge branch 'improvement/JAL-3783_upgrade_to_groovy...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-22
James Procter
Merge branch 'jims/bug/JAL-4298_java_console_causing_ha...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-22
James Procter
Merge branch 'develop' into improvement/JAL-3783_upgrad...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-22
James Procter
Merge branch 'jims/bug/JAL-4298_java_console_causing_ha...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-22
James Procter
JAL-4090 update docs for changed gradle -P options...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-21
James Procter
JAL-1332 JAL-4298 JAL-3772 rejig the quit handler so...
jims/bug/JAL-4298_java_console_causing_hang_at_startup
commit
|
commitdiff
|
tree
|
snapshot
2023-10-21
James Procter
Merge branch 'patch/JAL-4110_stdout_for_tests' into...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-21
James Procter
JAL-4110 allow configuration of stdout/err test output...
patch/JAL-4110_stdout_for_tests
commit
|
commitdiff
|
tree
|
snapshot
2023-10-21
James Procter
Merge branch 'develop' into patch/JAL-4110_stdout_for_tests
commit
|
commitdiff
|
tree
|
snapshot
2023-10-20
Ben Soares
JAL-4298 Update help docs to reflect Groovy changes
improvement/JAL-3783_upgrade_to_groovy-4
commit
|
commitdiff
|
tree
|
snapshot
2023-10-20
James Procter
Merge branch 'improvement/JAL-3783_upgrade_to_groovy...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-20
Ben Soares
JAL-4298 Remove a stray return in the processGroovyScri...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-20
James Procter
JAL-4298 reuse existing log level preference method
commit
|
commitdiff
|
tree
|
snapshot
2023-10-20
Ben Soares
JAL-4298 another implicated line
bug/JAL-4298_java_console_causing_hang_at_startup
commit
|
commitdiff
|
tree
|
snapshot
2023-10-20
James Procter
JAL-4298 try much harder to avoid modifying console...
patch/JAL-4298_synchronize_consoledoc
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
Ben Soares
Merge branch 'patch/JAL-4298_synchronize_consoledoc...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
Ben Soares
JAL-629 Fix --nodebug turning off debug mode from prope...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
Ben Soares
JAL-4298 comment markers
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
Ben Soares
Merge branch 'improvement/JAL-3783_upgrade_to_groovy...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
James Procter
JAL-4298 avoid deadlock waiting to update doc when...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
Ben Soares
JAL-4305 Isolate and unify the Jalview object from...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-19
Ben Soares
Merge branch 'improvement/JAL-3783_upgrade_to_groovy...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-18
Ben Soares
JAL-629 Run non-alignframe linked groovy scripts. ...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-18
Ben Soares
JAL-4262 Fix the nonblockingdialog so that Jalview...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-18
James Procter
Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
commit
|
commitdiff
|
tree
|
snapshot
2023-10-18
James Procter
JAL-4090 JAL-4303 as known defect
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
Merge branch 'bug/JAL-4302_treeheightrendererbroke...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
JAL-4090 JAL-4302 marked as known defect
bug/JAL-4302_treeheightrendererbroke
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
JAL-4134 TODO printNode update for columnTrees
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
JAL-4134 JAL-4302 remove unnecessary casts
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
JAL-4090 JAL-4089 document use of selected columns...
doc/JAL-4090_Release_2_11_3_0
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
Merge branch 'bug/JAL-4089_selectedcolshiddenregions...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-17
James Procter
JAL-4089 selected columns are reported in absolute...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-16
James Procter
Merge branch 'bug/JAL-4295_hangjmolandmouseovers' into...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-13
Ben Soares
JAL-3783 Updated groovy jars. Requires javaparser...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-13
James Procter
JAL-4295 concatenate all mouseover highlights into...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-13
Ben Soares
JAL-3783 Updated build process to allow multiple groovy...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-12
Ben Soares
JAL-3772 Fix the logic of prompt to save URL loaded...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-12
Ben Soares
JAL-629 null check and neatening code
commit
|
commitdiff
|
tree
|
snapshot
2023-10-11
Ben Soares
JAL-629 correct a timeout. Correct passing html flag.
commit
|
commitdiff
|
tree
|
snapshot
2023-10-11
Ben Soares
JAL-629 Add a timeout to modal dialogs for command...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-11
Ben Soares
JAL-629 Change getdown not to add -open argument
commit
|
commitdiff
|
tree
|
snapshot
2023-10-11
Ben Soares
JAL-629 Remove argfiles from the hashset of used argfil...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-11
Ben Soares
JAL-3772 Preference to NOT prompt to save remotely...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-11
Ben Soares
JAL-4298 Added diagnostics and minor dimension changes...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-05
Ben Soares
JAL-4298 Fixed initial log level to see .jalview_proper...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-05
James Procter
Merge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
commit
|
commitdiff
|
tree
|
snapshot
2023-10-05
James Procter
JAL-4090 JAL-3858 paedocs
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
Ben Soares
JAL-4001 Only use acquireDialogQueue and releaseDialogQ...
bug/JAL-4001_fix_About_Jalview_not_appearing
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
JAL-4217 move CommandsTest to testTask3 involving struc...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
Merge branch 'patch/JAL-4062_sort_and_merge_contiguousr...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
JAL-4090 fix up release notes and what’s new (inc remov...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
JAL-4061 JAL-4062 update find box image and docs in...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
Merge branch 'bug/JAL-244_interactingpngexportnotwysiwi...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-03
James Procter
JAL-4090 tweak pae doc
commit
|
commitdiff
|
tree
|
snapshot
2023-10-02
jprocter
JAL-4090 more JAL-3858 docs
commit
|
commitdiff
|
tree
|
snapshot
2023-10-02
jprocter
Merge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-4090 JAL-3855 updated figure and doc.. a little
bug/JAL-244_interactingpngexportnotwysiwig
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-244 ensure background is completely filled with...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-4090 JAL-4291 disable failing test and note as...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-244 attempt to fix broken test - still needs to...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-244 export image with full width IDs regardless...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-244 JAL-4091 allow calculation of label id width...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate...
commit
|
commitdiff
|
tree
|
snapshot
2023-10-01
James Procter
JAL-4160 update args used in test suite for new CLI...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
Merge branch 'bug/JAL-244_interactingpngexportnotwysiwi...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-629 JAL-4265 JAL-4286 report the filename for the...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-244 JAL-4090 use current IdWidth when exporting...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-4090 figures in paematrix doc
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-4288 fix up gradle generated getdown launch jvl...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-4090 fix url to new cli docs
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-4153 move JvCacheableInputBoxTest to testTask2
commit
|
commitdiff
|
tree
|
snapshot
2023-09-29
James Procter
JAL-3858 fix check annotation row and column positionin...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-28
James Procter
JAL-4090 JAL-3855 figure showing PAEs for epas1 homolog...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-28
James Procter
JAL-1556 JAL-4090 colour by annotation options on annot...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-28
James Procter
JAL-3858 don’t divide if we only had one value to count
commit
|
commitdiff
|
tree
|
snapshot
2023-09-28
James Procter
JAL-3858 check annotation row and column positioning...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-28
James Procter
JAL-3858 improved contactInterval computation and added...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-26
James Procter
JAL-3858 JAL-4090 pae matrix docs. WIP
commit
|
commitdiff
|
tree
|
snapshot
2023-09-26
James Procter
JAL-3858 JAL-4090 avoid NPE when given out of bound...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-25
James Procter
JAL-3858 JAL-4090 PAE documentation..
commit
|
commitdiff
|
tree
|
snapshot
2023-09-25
James Procter
JAL-3858 minimum value for a range is used to shade...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-25
James Procter
JAL-3858 javadoc and slightly revised green linear...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-25
James Procter
JAL-3858 report PAE range with sensible precision
commit
|
commitdiff
|
tree
|
snapshot
2023-09-25
James Procter
JAL-4090 fix link...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-22
James Procter
JAL-4090 smaller associate PDB file panel image in...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
James Procter
JAL-4090 what’s new and additional help docs for JAL...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
James Procter
JAL-4090 JAL-4262 JAL-4265 release notes
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
James Procter
JAL-1551 javadoc for mapUtils
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
James Procter
JAL-3855 disable the AlphaFold DB entry in Sequence...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
James Procter
JAL-3858 JAL-3855 documentation for import and display...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
James Procter
Merge branch 'merge/JAL-4262+JAL-4265+JAL-4269+JAL...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
Ben Soares
JAL-4265 Use ColourUtils.parseColourString() for consis...
merge/JAL-4262+JAL-4265+JAL-4269+JAL-4274+JAL-4277+JAL-4285
commit
|
commitdiff
|
tree
|
snapshot
2023-09-21
Ben Soares
Merge branch 'develop' into merge/JAL-4262+JAL-4265...
commit
|
commitdiff
|
tree
|
snapshot
2023-09-20
Ben Soares
JAL-4265 Use ColorUtils.parseColourString() and adjust...
commit
|
commitdiff
|
tree
|
snapshot
next