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jalview.git
2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 typo commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing... commit | commitdiff | tree | snapshot
2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-09 Jim Procterpatch fixes JAL-1558 commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about... commit | commitdiff | tree | snapshot
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double... commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterJAL-1151 source tidy commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into JAL-429_phylip-file... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-848 reinstate netbeans files from Phylip patch... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into Release_2_8... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-1286 missing file for testcase where file ends... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 updated pdb db fetcher test to verify the numbe... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 format and refactor test demonstrating PDB... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc commit | commitdiff | tree | snapshot
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch_i18n' into Release_2... commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message... commit | commitdiff | tree | snapshot
2014-10-03 Charles Ofoegburemoved local test data commit | commitdiff | tree | snapshot
2014-10-03 Charles OfoegbuLocal branch test commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterJAL-1338 note added #fridaycommits not actually connect... commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterJAL-1499 simple test to check JABA client can commit | commitdiff | tree | snapshot
2014-09-27 darolmarJAL-1355 commit | commitdiff | tree | snapshot
2014-09-26 darolmarJAL-1355 commit | commitdiff | tree | snapshot
2014-09-23 darolmarJAL-1355 commit | commitdiff | tree | snapshot
2014-09-19 darolmarJAL-1428 commit | commitdiff | tree | snapshot
2014-09-19 darolmarJAL-1355 commit | commitdiff | tree | snapshot
2014-09-19 darolmarSpanish translation spikes/jims_test commit | commitdiff | tree | snapshot
2014-09-19 darolmarJAL-1355 commit | commitdiff | tree | snapshot
2014-09-18 gmungocMerge branch 'JAL-1360_Branch' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-09-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 tweaks to match help page conventions, size... commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 consistent (bold) help page headings commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 Javadoc, Vector replaced with ArrayList, code... commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 Javadoc/JUnit commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class commit | commitdiff | tree | snapshot
2014-09-18 gmungocJAL-1544 it's --> its commit | commitdiff | tree | snapshot
2014-09-17 gmungocJAL-1360 updates to online help for user define colour... commit | commitdiff | tree | snapshot
2014-09-17 gmungocCorrect colour for text when colour set commit | commitdiff | tree | snapshot
2014-09-17 gmungocJAL-1360 refactored for consistent lighter/darker for commit | commitdiff | tree | snapshot
2014-09-17 gmungocJAL-1360 workaround for user defined colours display... commit | commitdiff | tree | snapshot
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... Merge branch 'bug/JAL-1486_flatfile' into Release_2_8_2... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... formatting and organise imports commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1486 fix: pass selected region to jalview.io via... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment... commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-535 tidy interface definition and documentation commit | commitdiff | tree | snapshot
2014-09-12 gmungocJAL-1516 handle null annotations commit | commitdiff | tree | snapshot
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview... commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 fix imports commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 log4j/slf additional jars commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 add log4j-slf4j bridge commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 finessing log4j and slf dependencies for struc... commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope... commit | commitdiff | tree | snapshot
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1379 Jpred JABA client test harness commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1333 allow reuse of existing chimera for new or... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... ensure the dataset is instantiated before materialising... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1379 new look JPred results commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... commit | commitdiff | tree | snapshot
2014-07-18 j.procter@dundee... JAL-1028 JAL-1142 refactor test to allow reuse of secon... commit | commitdiff | tree | snapshot
2014-07-08 j.procter@dundee... JAL-1333 allow reuse of existing viewers (of a specifie... commit | commitdiff | tree | snapshot
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement commit | commitdiff | tree | snapshot
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working... commit | commitdiff | tree | snapshot
2014-07-03 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' into features/JAL... commit | commitdiff | tree | snapshot
2014-07-03 j.procter@dundee... Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-07-03 Jim Procterfixes JAL-1530 commit | commitdiff | tree | snapshot
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra... commit | commitdiff | tree | snapshot
2014-07-02 Jim Procterformatting commit | commitdiff | tree | snapshot
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... commit | commitdiff | tree | snapshot
2014-07-02 Jim ProcterJAL-1333 test suite for key functionality of java inter... commit | commitdiff | tree | snapshot
2014-07-02 Jim Procter JAL-1333 Chimera specific code extracted from the... commit | commitdiff | tree | snapshot
2014-07-01 Jim ProcterMerge branch 'feature/JAL-1333' into features/JAL-1333 commit | commitdiff | tree | snapshot
2014-06-23 Jim ProcterMerge branch 'JAL-1526' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
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