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JAL-1360 consistent (bold) help page headings
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 18 Sep 2014 12:58:40 +0000 (13:58 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 18 Sep 2014 12:58:40 +0000 (13:58 +0100)
14 files changed:
help/html/colourSchemes/abovePID.html patch | blob | history
help/html/colourSchemes/blosum.html patch | blob | history
help/html/colourSchemes/buried.html patch | blob | history
help/html/colourSchemes/clustal.html patch | blob | history
help/html/colourSchemes/conservation.html patch | blob | history
help/html/colourSchemes/helix.html patch | blob | history
help/html/colourSchemes/hydrophobic.html patch | blob | history
help/html/colourSchemes/nucleotide.html patch | blob | history
help/html/colourSchemes/pid.html patch | blob | history
help/html/colourSchemes/purinepyrimidine.html patch | blob | history
help/html/colourSchemes/strand.html patch | blob | history
help/html/colourSchemes/taylor.html patch | blob | history
help/html/colourSchemes/turn.html patch | blob | history
help/html/colourSchemes/zappo.html patch | blob | history

diff --git a/help/html/colourSchemes/abovePID.html b/help/html/colourSchemes/abovePID.html
index e609972..74dd665 100755 (executable)
--- a/help/html/colourSchemes/abovePID.html
+++ b/help/html/colourSchemes/abovePID.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p> <em>Colouring above a percentage identity threshold</em></p>
+<p> <strong>Colouring above a percentage identity threshold</strong></p>
 <p> Selecting this option causes the colour scheme to be applied to only those
   residues that occur in that column more than a certain percentage of the time.
   For instance selecting the threshold to be 100 will only colour those columns
diff --git a/help/html/colourSchemes/blosum.html b/help/html/colourSchemes/blosum.html
index 6749d4e..338ca55 100755 (executable)
--- a/help/html/colourSchemes/blosum.html
+++ b/help/html/colourSchemes/blosum.html
@@ -31,7 +31,7 @@ td {
 
 <body>
 
-<p><em>Blosum62</a></em> </p>
+<p><strong>Blosum62</a></strong> </p>
 <p>Gaps are coloured white. If a residue matches the consensus sequence residue
   at that position it is coloured dark blue. If it does not match the consensus
   residue but the 2 residues have a positive Blosum62 score, it is coloured light
diff --git a/help/html/colourSchemes/buried.html b/help/html/colourSchemes/buried.html
index 1373404..5943d36 100755 (executable)
--- a/help/html/colourSchemes/buried.html
+++ b/help/html/colourSchemes/buried.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Buried index</em></p>
+<p><strong>Buried index</strong></p>
 <div align="center">
   <table width="400" border="1">
     <tr>
diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html
index b95a348..33455dc 100755 (executable)
--- a/help/html/colourSchemes/clustal.html
+++ b/help/html/colourSchemes/clustal.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Clustal X Colour Scheme</em></p>
+<p><strong>Clustal X Colour Scheme</strong></p>
   <p>This is an emulation of the default colourscheme used for alignments in 
   Clustal X, a graphical interface for the ClustalW multiple sequence alignment
     program. Each residue in the alignment is assigned a colour if the 
diff --git a/help/html/colourSchemes/conservation.html b/help/html/colourSchemes/conservation.html
index 8866435..5ceba85 100755 (executable)
--- a/help/html/colourSchemes/conservation.html
+++ b/help/html/colourSchemes/conservation.html
@@ -21,7 +21,7 @@
  -->
 <head><title>Colouring by Conservation</title></head>
 <body>
-<p><em>Colouring by Conservation</em></p>
+<p><strong>Colouring by Conservation</strong></p>
 <p>This is an approach to alignment colouring which highlights
   regions of an alignment where physicochemical properties are
   conserved. It is based on the one used in
diff --git a/help/html/colourSchemes/helix.html b/help/html/colourSchemes/helix.html
index e4142c1..8c698c0 100755 (executable)
--- a/help/html/colourSchemes/helix.html
+++ b/help/html/colourSchemes/helix.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Helix Propensity</em> </p>
+<p><strong>Helix Propensity</strong> </p>
 <div align="center">
   <table width="400" border="1">
     <tr>
diff --git a/help/html/colourSchemes/hydrophobic.html b/help/html/colourSchemes/hydrophobic.html
index 288a2d1..6b4cf2d 100755 (executable)
--- a/help/html/colourSchemes/hydrophobic.html
+++ b/help/html/colourSchemes/hydrophobic.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Hydrophobicity</em></p>
+<p><strong>Hydrophobicity</strong></p>
 <p>According to the hydrophobicity table of Kyte, J., and Doolittle, R.F., J.
   Mol. Biol. 1157, 105-132, 1982. The most hydrophobic residues according to this
   table are coloured red and the most hydrophilic ones are coloured blue.</p>
diff --git a/help/html/colourSchemes/nucleotide.html b/help/html/colourSchemes/nucleotide.html
index 601230b..065c818 100755 (executable)
--- a/help/html/colourSchemes/nucleotide.html
+++ b/help/html/colourSchemes/nucleotide.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Nucleotide Colours</em></p>
+<p><strong>Nucleotide Colours</strong></p>
 <div align="center">
   <table width="200" border="1">
     <tr>
diff --git a/help/html/colourSchemes/pid.html b/help/html/colourSchemes/pid.html
index f90fde9..47b992a 100755 (executable)
--- a/help/html/colourSchemes/pid.html
+++ b/help/html/colourSchemes/pid.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>PID Colours</em><br>
+<p><strong>PID Colours</strong><br>
   <br>
   The PID option colours the residues (boxes and/or text) according to the percentage
   of the residues in each column that agree with the consensus sequence. Only
diff --git a/help/html/colourSchemes/purinepyrimidine.html b/help/html/colourSchemes/purinepyrimidine.html
index 6655392..4337d48 100644 (file)
--- a/help/html/colourSchemes/purinepyrimidine.html
+++ b/help/html/colourSchemes/purinepyrimidine.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Purine/Pyrimidine Colours</em></p>
+<p><strong>Purine/Pyrimidine Colours</strong></p>
 <div align="center">
   <table width="200" border="1">
     <tr>
diff --git a/help/html/colourSchemes/strand.html b/help/html/colourSchemes/strand.html
index a653c8e..fe7c469 100755 (executable)
--- a/help/html/colourSchemes/strand.html
+++ b/help/html/colourSchemes/strand.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Strand propensity</em></p>
+<p><strong>Strand propensity</strong></p>
 <div align="center">
   <table width="400" border="1">
     <tr>
diff --git a/help/html/colourSchemes/taylor.html b/help/html/colourSchemes/taylor.html
index 268915d..a5c4f05 100755 (executable)
--- a/help/html/colourSchemes/taylor.html
+++ b/help/html/colourSchemes/taylor.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em><a name="taylor">Taylor</a></em></p>
+<p><strong><a name="taylor">Taylor</a></strong></p>
 <p>These colours were invented by Willie Taylor and an entertaining description
   of their birth can be found in Protein Engineering, Vol 10 , 743-746 (1997)</p>
 <div align="center">
diff --git a/help/html/colourSchemes/turn.html b/help/html/colourSchemes/turn.html
index ec65d6f..87dbe37 100755 (executable)
--- a/help/html/colourSchemes/turn.html
+++ b/help/html/colourSchemes/turn.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Turn propensity</em></p>
+<p><strong>Turn propensity</strong></p>
 <div align="center">
   <table width="400" border="1">
     <tr>
diff --git a/help/html/colourSchemes/zappo.html b/help/html/colourSchemes/zappo.html
index 01d2b37..db025c0 100755 (executable)
--- a/help/html/colourSchemes/zappo.html
+++ b/help/html/colourSchemes/zappo.html
@@ -30,7 +30,7 @@ td {
 </head>
 
 <body>
-<p><em>Zappo Colours</em><br>
+<p><strong>Zappo Colours</strong><br>
   <br>
   The residues are coloured according to their physicochemical properties as
   follows: </p>