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jalview.git
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 bug fix commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix commit | commitdiff | tree | snapshot
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to commit | commitdiff | tree | snapshot
2017-05-01 gmungocMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 desktop documentation for show occupancy prefe... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 use constant for preference token commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 action and label for occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'develop' into features/JAL-1933_occupancy commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuJAL-2489 Unit test for bug commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-04-25 tcofoegbuJAL-2489 bug fix commit | commitdiff | tree | snapshot
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... commit | commitdiff | tree | snapshot
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped... commit | commitdiff | tree | snapshot
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row... commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2295 Spanish translations for superposition / errors commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2295 Spanish translations added commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2361 Spanish text added commit | commitdiff | tree | snapshot
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text commit | commitdiff | tree | snapshot
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header... commit | commitdiff | tree | snapshot
2017-04-19 tcofoegbuJAL-2482 added null check commit | commitdiff | tree | snapshot
2017-04-18 tcofoegbuJAL-2482 Bugfix commit | commitdiff | tree | snapshot
2017-04-17 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-2361 tweak layout of warning message commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree... commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-2403 public static methods to convert distance... commit | commitdiff | tree | snapshot
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel... commit | commitdiff | tree | snapshot
2017-04-11 kiramtJAL-2479 Moved some network-dependent unit tests into... bug/JAL-2479unitteststoNetworkGroup commit | commitdiff | tree | snapshot
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... commit | commitdiff | tree | snapshot
2017-04-11 gmungocJAL-2428 Javadoc commit | commitdiff | tree | snapshot
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur... commit | commitdiff | tree | snapshot
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux... commit | commitdiff | tree | snapshot
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux commit | commitdiff | tree | snapshot
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher... commit | commitdiff | tree | snapshot
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA commit | commitdiff | tree | snapshot
2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-10 gmungocJAL-2416 test updated for reinstatement of '*' row... commit | commitdiff | tree | snapshot
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour... commit | commitdiff | tree | snapshot
2017-04-09 gmungocJAL-2393 remove unused commented code commit | commitdiff | tree | snapshot
2017-04-07 gmungocJAL-2393 code tidying for review comments commit | commitdiff | tree | snapshot
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check... commit | commitdiff | tree | snapshot
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of... commit | commitdiff | tree | snapshot
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but... commit | commitdiff | tree | snapshot
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour... commit | commitdiff | tree | snapshot
2017-04-03 gmungocJAL-2314 made non-test method non-public bug/JAL-2314 commit | commitdiff | tree | snapshot
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 commit | commitdiff | tree | snapshot
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461 commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2472 PrivilegedAccessor added commit | commitdiff | tree | snapshot
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView commit | commitdiff | tree | snapshot
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2401 code and help tidy for review comments commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 JAL-1933 test updated to include Occupancy commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 always run setup! bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2017-03-30 gmungocJAL-2346 more test coverage for AnnotationColourGradient commit | commitdiff | tree | snapshot
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice commit | commitdiff | tree | snapshot
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups commit | commitdiff | tree | snapshot
2017-03-29 gmungocJAL-2416 JAL-728 reduced dependency on Blosum62 impleme... commit | commitdiff | tree | snapshot
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... commit | commitdiff | tree | snapshot
2017-03-29 gmungocJAL-2416 explicit constant for unknown/unknown identity... commit | commitdiff | tree | snapshot
2017-03-28 gmungocJAL-2416 format matrix more readably commit | commitdiff | tree | snapshot
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