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jalview.git
2016-08-19
Jim Procter
JAL-2154 major rejigging of test looping again
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2016-08-19
Jim Procter
JAL-2154 disable DAS sources for Jalview2XML tests
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2016-08-19
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-08-19
tcofoegbu
JAL-1803 unit test for PDB chainCode save/restore from...
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2016-08-19
Jim Procter
JAL-2154 fix looping structure so for a particular...
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2016-08-19
Jim Procter
JAL-2154 drop unused hashes
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2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
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2016-08-19
Jim Procter
JAL-2154 reorder the dataset sequences according to...
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2016-08-19
Jim Procter
JAL-2154 belt-and-braces patch:
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2016-08-19
Jim Procter
JAL-2154 verify mapping’s sequenceI ref has been resolv...
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2016-08-19
Jim Procter
JAL-2154 use right reference string for recovering...
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2016-08-19
Jim Procter
JAL-2154 refactor setSequenceAt to replaceSequenceAt...
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2016-08-18
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-18
gmungoc
JAL-2077 using Platform method to check for Ctrl-down
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2016-08-18
gmungoc
JAL-1445 status message '...not containing...' for...
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2016-08-18
gmungoc
JAL-1693 show warning dialog if unable to make CDS...
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2016-08-18
gmungoc
JAL-1855 fail gracefully if XML has no <sequence> element
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2016-08-18
gmungoc
JAL-2077 handling Cmd-click in scale panel for Mac...
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2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
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2016-08-17
gmungoc
JAL-2146 status message now with formatted residue...
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2016-08-17
gmungoc
JAL-2173 don't remove annotation from hidden columns
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2016-08-17
gmungoc
JAL-2172 reverted to not sorting column selection
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2016-08-17
gmungoc
JAL-2105 rest versions updated to 4.6, change log link...
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2016-08-17
gmungoc
JAL-2172 handle case where column selection is not...
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2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
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2016-08-16
Jim Procter
JAL-2154 make sure any new sequences via DBRefEntry...
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2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
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2016-08-16
Jim Procter
JAL-2154 always resolve dataset sequences when creating...
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2016-08-16
Jim Procter
JAL-2154 [test] verify reference integrity for alignmen...
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2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-16
gmungoc
JAL-2172 unit test added
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2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
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2016-08-16
Jim Procter
JAL-2154 formatting
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2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
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2016-08-16
Jim Procter
JAL-2154 xref test harness - test fails if there are...
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2016-08-16
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-15
gmungoc
JAL-1841 better i18n text
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2016-08-15
tcofoegbu
JAL-1128 fix for truncated bottom boarder pixels in...
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2016-08-15
tcofoegbu
JAL-1128 fix for truncated bottom boarder pixels in...
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2016-08-15
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
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2016-08-13
Jim Procter
JAL-2154 refactor CrossRef UI code to its own class
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2016-08-13
Jim Procter
JAL-2154 check if the desktop is constructed before...
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2016-08-13
Jim Procter
JAL-2154 ignore all but the primary source resolved...
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2016-08-13
Jim Procter
JAL-2154 make sure we wait for constructor thread to...
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2016-08-12
gmungoc
JAL-1841 count (logo height) is valid pairs only; detec...
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2016-08-12
gmungoc
JAL-1841 bug fixes / code tidy for rna SS rendering...
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2016-08-12
gmungoc
JAL-1841, bug fix in rna SS consensus, additions to...
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2016-08-12
gmungoc
JAL-2171 default SS symbol to existing (if present)
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2016-08-11
Jim Procter
JAL-2154 clear the desktop before every 2xml test
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2016-08-11
Jim Procter
JAL-2154 jalview.gui.SequenceFetcher.fetchAndShow(db...
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2016-08-11
Jim Procter
JAL-2154 JAL-1993 relocate show dbchooser action out...
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2016-08-11
Jim Procter
JAL-2154 refactor setup/teardown from Jalview2xml for...
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2016-08-10
gmungoc
JAL-2124 i18n of 'All' menu item
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2016-08-10
gmungoc
JAL-2124 i18n of "All" menu item
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2016-08-10
gmungoc
JAL-2146 small optimisation (avoid String creation)
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2016-08-10
gmungoc
JAL-2146 show Column no [Sequence no [Residue / pos...
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2016-08-09
Jim Procter
JAL-2154 test for CDS->protein map
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2016-08-08
gmungoc
JAL-1577 rebuild menus when secondary structure manuall...
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2016-08-08
tcofoegbu
replaced broken biojsmsa home link in jalveiw help
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2016-08-08
gmungoc
JAL-2119 replaced link with a non-404 alternative
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2016-08-08
gmungoc
JAL-2168 -nonews option also mentioned here
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2016-08-08
gmungoc
JAL-2119 updates to invalid / obsolete help links
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2016-08-08
gmungoc
JAL-2168 document '-nonews' parameter
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2016-08-07
Jim Procter
JAL-2068 add the worker to the currently displayed...
patch/JAL-2068_JAL-2169_multiviewannotworker
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2016-08-07
Jim Procter
JAL-2154 add in missing class for createDatasetAlignmen...
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2016-08-05
gmungoc
JAL-2168 skip news feed if parameter "-nonews" is supplied
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2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
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2016-08-05
gmungoc
JAL-2164 add transferred annotation to sequence
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2016-08-04
Jim Procter
JAL-2154 make sure codon mappings between sequences...
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2016-08-04
Jim Procter
JAL-2154 todo
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2016-08-04
Jim Procter
JAL-2154 use convenience method
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2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEn...
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2016-08-04
Jim Procter
JAL-2110 comment on failing test (consider skipping...
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2016-08-04
Jim Procter
JAL-2154 test for CDS->protein map
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2016-08-04
Jim Procter
JAL-2046 stack trace for implementation warning
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2016-08-04
gmungoc
JAL-2164 changed to be Java 1.7 compliant
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2016-08-04
gmungoc
JAL-2008 handle fast mouse drag of feature ordering...
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2016-08-04
gmungoc
JAL-2015 convert Color from colour picker to FeatureColour
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2016-08-02
Jim Procter
JAL-2046 additional logic to suppress spurious implemen...
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2016-08-02
Jim Procter
Merge branch 'efficiency/JAL-2034_JAL-1421' into develop
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2016-08-02
Jim Procter
JAL-2034 show greyed out image during overview update
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-01
Jim Procter
JAL-2164 TODO: make test pass for JMOL_PARSER
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2016-08-01
Jim Procter
JAL-2164 JAL-1919 JAL-1270 use structure import setting...
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2016-08-01
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-08-01
tcofoegbu
JAL-2164 bugfix to convert insCodes of '\000' to '...
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2016-08-01
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into develop
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-2164 prevent jalview news from opening
task/JAL-2164_mcviewforoldjalviewprojects
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2016-08-01
Jim Procter
JAL-2164 clear the desktop before testStoreAndRecoverEx...
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
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2016-07-29
Jim Procter
JAL-1772 JAL-2164 make expanded view save/restore test...
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2016-07-29
Jim Procter
JAL-2164 JAL-1772 explodeViews can be static, so make...
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2016-07-29
tcofoegbu
JAL-1957 JAL-1479 updated SIFTS user docs
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2016-07-29
Jim Procter
JAL-2164 revert tests depending on import of legacy...
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2016-07-29
Jim Procter
JAL-2154 disable visual delay only after completed...
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