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jalview.git
2019-01-09
Ben Soares
JAL-3141 forgot to add this file after extracting the...
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2019-01-09
Ben Soares
JAL-3141 Made one more suggested change from code review
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2019-01-08
Ben Soares
JAL-3141 Made some more suggested changes from code...
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2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
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2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
feature/JAL-3180colourAnnotationMenu
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2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
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2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testab...
feature/JAL-3181linkOrdering
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2019-01-04
gmungoc
JAL-3181 simplified code and test
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2019-01-03
gmungoc
JAL-3181 order link menu items
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2019-01-03
gmungoc
JAL-1889 additional test for clover-added fields
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2019-01-03
gmungoc
JAL-1889 ignore 'synthetic' fields added for jacoco
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2018-12-21
gmungoc
JAL-1767 minimise local variable scope
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2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
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2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
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2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
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2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crossha...
bug/JAL-2621
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2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
bug/JAL-2791exportFilteredFeature
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2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
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2018-12-19
gmungoc
JAL-3032 ignore /site also on non-JS branches
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2018-12-18
Jim Procter
JAL-2846 ahem - proper release note for this fix from...
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2018-12-18
Jim Procter
JAL-3178 known defect in release notes
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2018-12-18
Ben Soares
JAL-3130 added a javac helper script too (like the...
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2018-12-17
Jim Procter
JAL-3111 JAL-2846 release notes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2846' into develop
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2018-12-17
Jim Procter
JAL-3111 tweaked release notes and documented JAL-2864
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
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2018-12-17
Jim Procter
JAL-2865 release notes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
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2018-12-17
Jim Procter
Merge branch 'task/JAL-3174_fixed_filename_tests' into...
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2018-12-17
Jim Procter
JAL-3174 backout un-needed stacktrace for exception...
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2018-12-17
Ben Soares
JAL-3174 Merging in some test filename-case fixes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2541cutRelocateFeatures' into...
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2018-12-17
Jim Procter
JAL-2541 JAL-2822 release notes
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2018-12-17
Jim Procter
JAL-3111 bump release 2.11 release to January 2019
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2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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2018-12-17
Ben Soares
JAL-3130 java bash wrapper to choose which java to...
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2018-12-17
Ben Soares
JAL-3130 Some fixes to ant build xml, and the modules...
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2018-12-14
Jim Procter
JAL-3171 dataset reference tests now in Functional...
bug/JAL-3171_maintain_datasets_across_views
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2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
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2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
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2018-12-14
Jim Procter
JAL-3171 more complex project test - where sequences...
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2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
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2018-12-14
Jim Procter
JAL-3171 failing test for legacy projects and fixing...
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2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
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2018-12-14
Jim Procter
JAL-3171 failing test checking preservation of dataset
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2018-12-14
Ben Soares
JAL-3130 single class testing on CLI with ant [ -Dclass...
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2018-12-13
Ben Soares
JAL-3130 Fixing a few more tests that pass on a Mac...
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2018-12-13
Ben Soares
JAL-3130 Use non-deprecated check for Mac CMD key press
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2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
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2018-12-11
Ben Soares
JAL-3130 Turns out Quit/About/Preferences handlers...
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2018-12-10
Ben Soares
JAL-3130 another tweak for bamboo to add the JDK jmods...
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2018-12-10
Ben Soares
JAL-3130 build.xml tweaks for clover-3.4.1
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2018-12-10
gmungoc
JAL-1421 added type to List and Vector
feature/JAL-3169cancelOverwrite
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2018-12-10
gmungoc
JAL-3169 leave file browser open on Cancel in overwrite...
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2018-12-10
Ben Soares
JAL-3130 tweaked build.xml to do java 11 bytecode compi...
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2018-12-07
Ben Soares
JAL-3130 Some re-reorganisation for build process
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2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
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2018-12-06
gmungoc
JAL-1854 Checkstyle updated to 8.12
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2018-12-03
Ben Soares
JAL-3130 de-multi-release-jar.sh Script to make multi...
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2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2018-12-03
Ben Soares
JAL-3130 Added flagged runtime 'Reflection' check on...
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2018-11-30
Ben Soares
JAL-3130 refactored a lot of this. See the JAVA-11...
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2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
bug/JAL-2420revealAllMenu
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2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
bug/JAL-3166npeAllRowsHidden
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2018-11-29
gmungoc
JAL-3140 updated IntervalStore jar
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2018-11-29
gmungoc
JAL-3140 named tagged version of intervalstore.jar
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2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
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2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
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2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
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2018-11-22
gmungoc
JAL-3161 limit tooltip and status updates to visible...
bug/JAL-3161annotationTooltipRange
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2018-11-20
Ben Soares
.gitignore changes
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2018-11-20
Jim Procter
JAL-3127 Sequence ID Colour and nominal spanish translation
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2018-11-19
Jim Procter
JAL-3127 javadoc, don’t darken white when shading resid...
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2018-11-19
Jim Procter
JAL-3156 JAL-3127 code tidy
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2018-11-19
Jim Procter
JAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen...
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2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
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2018-11-19
Jim Procter
JAL-3127 JAL-2773 don’t need to call paintAlignment...
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2018-11-19
Ben Soares
JAL-1988 JAL-3130 New jlinked JRE in jalview_java2...
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2018-11-19
Jim Procter
JAL-3127 tidier tree group colour -> view propagation
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2018-11-19
gmungoc
JAL-3154 disable drag to reorder JTable columns
bug/JAL-3154tableColumnDrag
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2018-11-09
Ben Soares
JAL-1988 This fixes the Quit response when user cancels...
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2018-11-09
Jim Procter
JAL-3127 polished setColor after review
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2018-11-08
Ben Soares
JAL-1988 JAL-3130 Now we're in Java 11 land, using...
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2018-11-08
gmungoc
JAL-1889 ignore Clover instrumentation in test (second...
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2018-11-08
gmungoc
JAL-1889 unit test tweaks for running on server
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2018-11-08
Ben Soares
JAL-1988 tidying, plus don't add Preferences to Tools...
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2018-11-08
Ben Soares
JAL-1988 JAVA 11 enabled version with Quit, Preferences...
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2018-11-05
Ben Soares
JAL-1988 Investigating...
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2018-11-05
Ben Soares
JAL-3141 Slightly improved message and more thorough...
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2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
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2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
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2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
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2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
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2018-10-25
gmungoc
JAL-3143 unit tests updated for code changes!
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2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
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2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
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2018-10-25
gmungoc
JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
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2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
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