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jalview.git
2016-12-21
gmungoc
JAL-2360 set new/loaded colour scheme name correctly
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2016-12-21
gmungoc
JAL-2360 simplified code to create a new colour scheme
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2016-12-21
gmungoc
JAL-2360 added a table to show score colours
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2016-12-21
gmungoc
JAL-2360 ColourMenuHelper now builds and selects items...
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2016-12-21
gmungoc
JAL-2360 comment only
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2016-12-21
gmungoc
JAL-2360 tidy up, simplify isApplicableTo test
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2016-12-21
gmungoc
JAL-2360 no RNAHelices colouring for groups
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2016-12-21
gmungoc
JAL-2361 Blosum is enabled for peptide
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2016-12-21
gmungoc
JAL-1421 add types to Map
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2016-12-21
gmungoc
JAL-2360 fix incorrect action on Cancel user defined...
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2016-12-21
gmungoc
JAL-2360 tidy spelling and file contents order only
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2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
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2016-12-20
gmungoc
JAL-2360 testRegisterColourScheme to demonstrate a...
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2016-12-20
gmungoc
JAL-2360 ColourSchemes holds configured schemes, AlignF...
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2016-12-19
gmungoc
JAL-2360 amended toAppletParameter() for reproducible...
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2016-12-19
gmungoc
JAL-2361 select colour menu item by matching its name...
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2016-12-16
Jim Procter
JAL-2360 report line number when threshold cannot be...
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2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
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2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
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2016-12-16
gmungoc
JAL-1705 JAL-98 use SortedMap as more accurate type...
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2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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2016-12-16
gmungoc
JAL-1354 use i18n text for expected value
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2016-12-14
gmungoc
JAL-2360 test added
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2016-12-14
gmungoc
JAL-2360 added check for null annotations array
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2016-12-14
gmungoc
JAL-1544 JAL-2360 reformatted help page a bit nicer...
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2016-12-13
gmungoc
JAL-2365 test for lightgray, darkgray not lightGray...
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2016-12-13
gmungoc
JAL-2360 code formatting only and if-else changed to...
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2016-12-13
gmungoc
JAL-2361 adding items to applet colour menus, TCoffee...
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2016-12-12
gmungoc
JAL-2361 extract methods to (re-)build colour menu
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2016-12-12
gmungoc
JAL-2360 simplify nucleotide flag, remove setter
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2016-12-12
gmungoc
JAL-2361 use consistent colour names on menus
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2016-12-12
gmungoc
JAL-1544 backgroud -> background
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2016-12-12
gmungoc
JAL-2362 return correct lower-case colour; Javadoc...
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2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
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2016-12-09
gmungoc
JAL-2105 updated for reviewed REST version 4.8
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2016-12-09
gmungoc
JAL-1895 suppress RNA interaction colour option
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2016-12-08
gmungoc
JAL-2359 add Window menu entry only after all danger...
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2016-12-07
gmungoc
JAL-2356 use cached Sifts file if not expired
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2016-12-07
gmungoc
JAL-2354 handle error response when fetching features
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2016-12-07
gmungoc
JAL-2344 handle null format, simplify JalviewFileChoose...
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2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
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2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
features/JAL-2344FileFormatI
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2016-11-29
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-29
Jim Procter
JAL-2325 update release date in whatsNew
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2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
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2016-11-29
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-11-29
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-28
Jim Procter
JAL-2325 JAL-1878 update minimum versions of JRE for...
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2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
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2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
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2016-11-28
gmungoc
JAL-2345 cache generated ImageIcon per file path
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2016-11-28
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-28
Jim Procter
JAL-2325 finalise release notes
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2016-11-25
gmungoc
JAL-2344 dynamically determine recognised extensions...
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2016-11-25
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-25
Jim Procter
JAL-2325 JAL-2273 update vms bound to different installers
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2016-11-25
Jim Procter
JAL-2325 more ignores on sourcedist build
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-25
gmungoc
JAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25
gmungoc
JAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
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2016-11-24
gmungoc
Distinguish text-only output formats and others (.jar...
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2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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2016-11-24
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-24
Jim Procter
JAL-2325 exclude .class and .* files (install anywhere...
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2016-11-24
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-24
Jim Procter
JAL-2325 applied BSD license for chimera/StrucViz2...
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2016-11-24
gmungoc
Further tweaks to get tests passing
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2016-11-24
tcofoegbu
JAL-2326 added layer of abstraction between Jalview...
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2016-11-24
Jim Procter
JAL-2325 apply license to new source files
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2016-11-24
Jim Procter
JAL-2325 update release date to next Tuesday
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2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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2016-11-24
Jim Procter
JAL-2325 tidy up release notes
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2016-11-23
Jim Procter
JAL-2325 remove 2.10.0 what’s new
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2016-11-23
Jim Procter
JAL-2325 latest release to 2.10
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2016-11-23
Jim Procter
JAL-1738 Ctrl/Cmd/Alt modifiers and mention that B...
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2016-11-23
Jim Procter
JAL-1738 hint about using the task switching key combin...
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2016-11-23
Jim Procter
JAL-1738 mention Ctrl/Cmd/Alt modifiers and mention...
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2016-11-23
Jim Procter
JAL-1738 mention Ctrl or Cmd for toggle behaviour in...
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2016-11-23
Jim Procter
JAL-2325 updated what’s new for 2.10.1
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2016-11-23
Jim Procter
JAL-2325 reword ‘tame tooltip’ JAL-1723 release note
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2016-11-23
Jim Procter
JAL-2325 rejig authors and add Kira
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2016-11-23
Jim Procter
JAL-2282 JAL-2325 added link to help text from release...
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2016-11-23
Jim Procter
JAL-2325 updated what’s new for 2.10.1
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2016-11-23
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-11-23
Jim Procter
JAL-2282 revised docs about warning message.
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2016-11-23
gmungoc
JAL-1738 Spanish versions added
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2016-11-23
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-23
Jim Procter
JAL-2325 JAL-2332 release notes
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2016-11-23
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-23
Jim Procter
Merge branch 'bug/JAL-2323disulfideOverview' into develop
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2016-11-23
Jim Procter
JAL-2325 moved disulphide/contact bug fixes (JAL-2323...
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2016-11-23
Jim Procter
JAL-2325 release notes formatting
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2016-11-23
Jim Procter
JAL-2325 release notes
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2016-11-23
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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