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2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop commit | commitdiff | tree | snapshot
2014-11-23 Jim Procteremploy test and secondary structure character for deter... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 refactoring of stockholm test commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annot... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and disti... commit | commitdiff | tree | snapshot
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character... commit | commitdiff | tree | snapshot
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value... commit | commitdiff | tree | snapshot
2014-11-20 Jim ProcterJAL-1569 remove log output during RNA secondary structu... commit | commitdiff | tree | snapshot
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into develop commit | commitdiff | tree | snapshot
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... commit | commitdiff | tree | snapshot
2014-11-18 Jim ProcterJAL-674 JAL-1512 JAL-1333 documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1517 JAL-1587 JAL-674 secondary structure and annot... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1517 release notes for 2.8.2 commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 distinct calc IDs for JPredMSA and Jpred singl... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 propagate results of JABA sequence based predi... commit | commitdiff | tree | snapshot
2014-11-17 Jim Procterimports and formatting commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 propagate JPred annotation from legacy jpred... commit | commitdiff | tree | snapshot
2014-11-17 Jim Procterformatting commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into develop commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1469 help documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1469 help documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282 commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1580 size parameters dialog to height of Desktop commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuJAL-1570 patch to enable adding a webservice which... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc... commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff | tree | snapshot
2014-11-14 Charles OfoegbuMerge branch 'feature/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-14 Charles Ofoegbugit conflict resolution commit | commitdiff | tree | snapshot
2014-11-14 Charles Ofoegbuupdated BioJsTemplate.txt commit | commitdiff | tree | snapshot
2014-11-14 Charles Ofoegbuhouse keeping features/JAL-1541_BioJsMSAViewer-export-option commit | commitdiff | tree | snapshot
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-14 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-14 Charles OfoegbuHouse keeping commit | commitdiff | tree | snapshot
2014-11-14 gmungocJAL-1528 Chimera Help doc + fixes to setting colours commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies commit | commitdiff | tree | snapshot
2014-11-13 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-13 gmungocmerge commit | commitdiff | tree | snapshot
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... commit | commitdiff | tree | snapshot
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close... commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbuhouse-keeping commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuAdded support for SVG Export commit | commitdiff | tree | snapshot
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 exclude all unnecessary jalview.io classes... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'develop' into features/JAL-1541_BioJsMSAV... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build commit | commitdiff | tree | snapshot
2014-11-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 javadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping... commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbumearge with develop commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... commit | commitdiff | tree | snapshot
2014-11-11 gmungocJAL-1527 opening a project saved with JMol should use... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuUpdated BioJsTemplate to not show the menu by default... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... commit | commitdiff | tree | snapshot
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch commit | commitdiff | tree | snapshot
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew commit | commitdiff | tree | snapshot
2014-11-06 Jim ProcterMerge branch 'features/JAL-1152annotationSorting' into... commit | commitdiff | tree | snapshot
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-06 gmungocJAL-1152 use a proper RadioButton not a faked one commit | commitdiff | tree | snapshot
2014-11-05 gmungocJAL-674 Prefences tweaks incl help documentation for... commit | commitdiff | tree | snapshot
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