JAL-1517 release notes for 2.8.2
authorJim Procter <jprocter@dundee.ac.uk>
Mon, 17 Nov 2014 17:12:54 +0000 (17:12 +0000)
committerJim Procter <jprocter@dundee.ac.uk>
Mon, 17 Nov 2014 17:12:54 +0000 (17:12 +0000)
help/html/releases.html
help/html/whatsNew.html

index 6b92a2c..8913a32 100755 (executable)
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+                                       <strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>18/11/2014</em></strong>
+                               </div></td>
+                       <td>
+                               <!--  New features --> <!--  For major releases, split into sections: Application | Applet | General | Deployment and Documentation -->
+                               <em>General</em>
+                               <ul>
+                               </ul> <em>Application</em>
+                               <ul>
+                                       <li>Update Jalview project format:
+                                               <ul>
+                                               </ul>
+                                       </li>
+                               </ul>
+                       </td>
+                       <td>
+                               <!--  issues resolved --> <em>Application</em>
+                               <ul>
+
+                               </ul> <em>Applet</em>
+                               <ul>
+                               </ul> <em>Other</em>
+                               <ul>
+                               </ul>
+                       </td>
+               </tr>
+               <tr>
+                       <td><div align="center">
                                        <strong><a name="Jalview.2.8.1">2.8.1</a><br /> <em>4/6/2014</em></strong>
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index dd536b1..ae45aae 100755 (executable)
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        <p>
-               <strong>What's new ?</strong></p>
-       <p>
-               Jalview 2.8.1 includes new features for group creation, RNA secondary
-               structure prediction and a host bug fixes. It also includes support
-               for <a href="http://www.compbio.dundee.ac.uk/JABAWS">version 2.1
-                       of JABA</a> and includes a Spanish translation of its user interface.<br />
-               The highlights are detailed below, and the full list is given in the <a
-                       href="releases.html#Jalview2.8.1">Jalview 2.8.1 Release Notes</a>.
-       </p>
-       <p>The Desktop and web based applet include new keystrokes for
-               defining and undefining groups, and PAM250 has been added to the range
-               of score models available for use by the tree and PCA calculations.
-               The Jalview project file format has also been extended for handling
-               RNA and protein secondary structure annotation, in anticipation for
-               new structure based secondary structure support in Jalview 2.8.2.</p>
-       <p><strong>Internationalisation</strong></p>
-       <p>Jalview 2.8.1 is the first release to include support for
-               displaying Jalview's user interface in different languages. In August
-               2013, David Rold&aacute;n-Martinez took on the task of
-               internationalising Jalview's user interface. He also recruited Sara
-               Hern&aacute;ndez D&iacute;az and Laura Ferrandis Martinez who created
-               Jalview's first spanish user interface translation.</p>
-       <p>
-               If you notice any problems, or would like to help translate Jalview's
-               user interface into other languages, head over to <a
-                       href="http://issues.jalview.org">issues.jalview.org</a> and put in a
-               feature request describing the translations you can provide to the <a
-                       href="http://issues.jalview.org/browse/JAL/component/10682">i18n
-                       component</a>. David has also <a
-                       href="https://wiki.jalview.org/index.php/Development:i18n">documented
-                       the process of creating i18n translations</a> to help you get started.
+               <strong>What's new ?</strong>
        </p>
-       <p><strong>RNA Secondary Structure Prediction with JABA 2.1</strong></p>
-       <p>
-               This version of Jalview includes a client to access the new services available in <a
-                       href="http://www.compbio.dundee.ac.uk/jabaws/">JABA v2.1</a> , which
-               provides services for RNA consensus secondary structure prediction and
-               two new alignment programs (<a
-                       href="http://sourceforge.net/projects/glprobs/">GLProbs</a> and <a
-                       href="http://sourceforge.net/projects/msaprobs/">MSAProbs</a>).</p>
        <p>
-               To see how to perform RNA secondary structure predictions like the one below, take a look at the <a href="webServices/RNAalifold.html">RNAAliFold
-                       client documentation</a>. 
+               Jalview 2.8.2 is the first release produced by our new core
+               development team.<br /> It incorporates many minor improvements and
+               bug-fixes, and also includes new features for working with 3D
+               structure data, shading alignments by secondary structure and
+               generation of alignment figures as Scalable Vector Graphics. <br />As
+               ever, the highlights are detailed below, and the full list is given in
+               the <a href="releases.html#Jalview2.8.2">Jalview 2.8.2 Release
+                       Notes</a>.
        </p>
-  <div align="center">
-    <img src="webServices/RNAalifoldAnnotationRows.png" width="500" height="216"> <br> <em>The RNAalifold client was implemented by Jalview's 2013
-                       summer student, Dan Barton.</em>
-       </div>
 </body>
 </html>