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jalview.git
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl... commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2480 redundant code removed commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2403 use preferred factory method to create score... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetS... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in Sequenc... commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-2505 refactored SequenceFeature construction so... commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And applet commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2505 delete and readd amended sequence feature commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2480 JAL-2505 guard against duplicating links commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test commit | commitdiff | tree | snapshot
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions commit | commitdiff | tree | snapshot
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 test a Uniprot fetch commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value... commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0 commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 simplify code commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-1933 Spanish for Occupancy commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 fixme’s removed commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d) commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2499 inlined two 1-line methods commit | commitdiff | tree | snapshot
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... commit | commitdiff | tree | snapshot
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 bug fix commit | commitdiff | tree | snapshot
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix commit | commitdiff | tree | snapshot
2017-05-01 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to commit | commitdiff | tree | snapshot
2017-05-01 gmungocMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 desktop documentation for show occupancy prefe... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 use constant for preference token commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 action and label for occupancy commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... commit | commitdiff | tree | snapshot
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... commit | commitdiff | tree | snapshot
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