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jalview.git
2011-10-03
jprocter
Merge branch 'Release_2_7_Branch'
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2011-10-03
jprocter
redact previous commit - fileassociation tag not allowe...
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2011-10-03
jprocter
removed unnecessary parameters and changed alignment...
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2011-10-03
jprocter
compile swingreader component for java 1.5 (JAL-948)
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2011-09-28
jprocter
Merge branch 'Release_2_7_Branch'
Release_2_7
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2011-09-28
jprocter
jnlps with and without file associations for default...
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2011-09-28
jprocter
broken link. rearranged opening pg
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2011-09-27
jprocter
typo
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2011-09-27
jprocter
switch to git release building
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2011-09-27
jprocter
patch name, reference and URL for Multi-Harmony : JAL-724
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2011-09-27
jprocter
ensure server errors return a URL and response document...
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2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
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2011-09-27
jprocter
same overzeaolous logic (JAL-915)
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2011-09-27
jprocter
start of Release 2.7
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2011-09-27
jprocter
JAL-944 - replaced stale PFAM links for 2.7 release...
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2011-09-27
jprocter
backout overzealous logic disabling feature links in...
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2011-09-27
jprocter
NPE fix
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-09-26
jprocter
exclude build artefacts from repository
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2011-09-26
jprocter
updated documentation table of contents, menus and...
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2011-09-26
jprocter
documentation for news reader (JAL-943)
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2011-09-26
jprocter
tweak installer with IA2010 - fixes installerObjects...
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2011-09-26
jprocter
fix jar dependency in InstallAnywhere
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2011-09-26
jprocter
tidying classpath and fixing InstallAnywhere build
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2011-09-26
jprocter
tweaked dialog layout. should consider refactoring
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2011-09-26
jprocter
add new dependencies for 2.7 release
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2011-09-26
jprocter
make news window a modal dialog on the jalview desktop...
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2011-09-26
jprocter
avoid deprecation and ensure dialog close event is...
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2011-09-25
jprocter
organise imports
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2011-09-25
jprocter
more focus fixing (JAL-943)
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2011-09-25
jprocter
fix logic to ensure first check for news is correct...
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2011-09-23
jprocter
try even harder to get focus - for benefit of windows...
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2011-09-23
jprocter
ensure blog window gets put to front after dialogs...
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2011-09-23
jprocter
debugged example file again - old version had view...
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2011-09-22
jprocter
refactor and remove excess imports (JAL-943)
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2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
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2011-09-20
jprocter
help documentation for Jalview 2.7
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2011-09-16
jprocter
JAL-747 - made warning message friendlier and more...
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2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
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2011-09-16
jprocter
numerically ataxic comments.
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2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
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2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
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2011-09-16
jprocter
JAL-468 typo and label length in dialog
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2011-09-16
jprocter
patch for JAL-935 - warning messages raised when alignm...
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2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
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2011-09-16
jprocter
tweak english
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2011-09-15
jprocter
documentation for new preferences (JAL-234 and web...
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2011-09-15
jprocter
documentation for JAL-234
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2011-09-15
jprocter
JAL-860 fixed grammar for one structure vs many structu...
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2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
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2011-09-14
jprocter
typo
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2011-09-14
jprocter
JAL-234 - default button to reset min/max colours and...
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2011-09-14
jprocter
JAL-934 - refactor to use label font functions
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2011-09-14
jprocter
JAL-934 - refactor to use label font functions
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2011-09-14
jprocter
JAL-934 - standard label font functions
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2011-09-14
jprocter
JAL-931 (related) - utility to split an alignment datab...
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2011-09-14
jprocter
JAL-931 - groovy test harness code.
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2011-09-14
jprocter
test data for JAL-701
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2011-09-14
jprocter
patch for NPE (not clear if NPE is evidence of deeper...
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-14
jprocter
fix for JAL-930
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-12
jprocter
JAL-927 ensure api method calls that affect GUI state...
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2011-09-05
jprocter
note about ensuring callers of loadAlignment(..) save...
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2011-08-30
jprocter
patch for JAL-731
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2011-08-30
jprocter
patch for JAL-729 - NPE avoided and cut and paste impor...
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2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
JAL-715 - conditional to hide the RSBS service editing...
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2011-08-30
jprocter
JAL-715 rsbs service editing
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2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
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2011-08-30
jprocter
JAL-715 store/reset .jalview_properties setting for...
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2011-08-30
jprocter
JAL-715 serialise and deserialise multiple rest client...
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2011-08-30
jprocter
JAL-715 - notify user of parsing problems for results...
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2011-08-30
jprocter
retrieve URL for datasource of packed set
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2011-08-30
jprocter
ensure parsing errors and 'lack of data' errors are...
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2011-08-30
jprocter
JAL-715 need to URLencode constant values when serializ...
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2011-08-29
jprocter
JAL-715 - grammar for warning message.
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2011-08-29
jprocter
added notes on third party library licencing and update...
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2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
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2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
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2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
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2011-08-29
jprocter
JAL-633 simple concrete parameter and option objects...
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2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
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2011-08-25
jprocter
constructor only needs GUI container interface
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2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
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2011-08-25
jprocter
JAL-715 - better validation logic
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2011-08-25
jprocter
debug dialog
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2011-08-25
jprocter
JAL-715 - prevent empty elements being generated
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2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
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2011-08-24
jprocter
new Swing and SWT capable form layout manager - miglayout
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2011-08-24
jprocter
JAL-715 bugfixes and refactor of parsing code for use...
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2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
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2011-08-23
jprocter
JAL-715 - simple tests and functions for IO of service...
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2011-08-23
jprocter
JAL-715 - allow rest service attributes to be exported...
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2011-08-19
jprocter
JAL-908 JAL-912 JAL-516 documented annotation HTML...
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2011-08-19
jprocter
JAL-908,JAL-701 - patch applet to strip HTML tags from...
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2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
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