jalview.git
2023-10-25 James ProcterJAL-4312 call AlignFrame.setAnnotationsVisibility on...
2023-10-23 James ProcterMerge branch 'develop' into improvement/JAL-4124_dont_d...
2023-10-23 James ProcterJAL-4090 release weds 25th Oct 23 - JAL-4308 release...
2023-10-23 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into...
2023-10-23 James ProcterMerge branch 'improvement/JAL-4308_smalleridtooltip...
2023-10-23 James ProcterJAL-4090 defensive check for featureSettings redraws... improvement/JAL-4308_smalleridtooltip
2023-10-23 James ProcterJAL-4308 reduce number of refs to 5, always have canoni...
2023-10-22 James ProcterJAL-4153 avoid use of invokeAndWait, increase wait...
2023-10-22 James ProcterJAL-1551 errant tab and import
2023-10-22 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc...
2023-10-22 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy...
2023-10-22 James ProcterMerge branch 'jims/bug/JAL-4298_java_console_causing_ha...
2023-10-22 James ProcterMerge branch 'develop' into improvement/JAL-3783_upgrad...
2023-10-22 James ProcterMerge branch 'jims/bug/JAL-4298_java_console_causing_ha...
2023-10-22 James ProcterJAL-4090 update docs for changed gradle -P options...
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup
2023-10-21 James ProcterMerge branch 'patch/JAL-4110_stdout_for_tests' into...
2023-10-21 James ProcterJAL-4110 allow configuration of stdout/err test output... patch/JAL-4110_stdout_for_tests
2023-10-21 James ProcterMerge branch 'develop' into patch/JAL-4110_stdout_for_tests
2023-10-20 Ben SoaresJAL-4298 Update help docs to reflect Groovy changes improvement/JAL-3783_upgrade_to_groovy-4
2023-10-20 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy...
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri...
2023-10-20 James ProcterJAL-4298 reuse existing log level preference method
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide
2023-10-20 Ben SoaresJAL-4298 another implicated line bug/JAL-4298_java_console_causing_hang_at_startup
2023-10-20 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into...
2023-10-20 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc...
2023-10-20 James ProcterJAL-4307 some models return null for hetatm list
2023-10-20 James ProcterJAL-4298 try much harder to avoid modifying console... patch/JAL-4298_synchronize_consoledoc
2023-10-19 Ben SoaresMerge branch 'patch/JAL-4298_synchronize_consoledoc...
2023-10-19 Ben SoaresJAL-629 Fix --nodebug turning off debug mode from prope...
2023-10-19 Ben SoaresJAL-4298 comment markers
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy...
2023-10-19 James ProcterJAL-4298 avoid deadlock waiting to update doc when...
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from...
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for...
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy...
2023-10-18 Ben SoaresJAL-629 Run non-alignframe linked groovy scripts. ...
2023-10-18 Ben SoaresJAL-4262 Fix the nonblockingdialog so that Jalview...
2023-10-18 James ProcterMerge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
2023-10-18 James ProcterJAL-4090 JAL-4303 as known defect
2023-10-17 James ProcterMerge branch 'bug/JAL-4302_treeheightrendererbroke...
2023-10-17 James ProcterMerge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
2023-10-17 James ProcterJAL-4090 JAL-4302 marked as known defect bug/JAL-4302_treeheightrendererbroke
2023-10-17 James ProcterJAL-4134 TODO printNode update for columnTrees
2023-10-17 James ProcterJAL-4134 JAL-4302 remove unnecessary casts
2023-10-17 James ProcterJAL-4090 JAL-4089 document use of selected columns... doc/JAL-4090_Release_2_11_3_0
2023-10-17 James ProcterMerge branch 'bug/JAL-4089_selectedcolshiddenregions...
2023-10-17 James ProcterJAL-4089 selected columns are reported in absolute...
2023-10-16 James ProcterMerge branch 'bug/JAL-4295_hangjmolandmouseovers' into...
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser...
2023-10-13 James ProcterJAL-4295 concatenate all mouseover highlights into...
2023-10-13 Ben SoaresJAL-3783 Updated build process to allow multiple groovy...
2023-10-12 Ben SoaresJAL-3772 Fix the logic of prompt to save URL loaded...
2023-10-12 Ben SoaresJAL-629 null check and neatening code
2023-10-11 Ben SoaresJAL-629 correct a timeout. Correct passing html flag.
2023-10-11 Ben SoaresJAL-629 Add a timeout to modal dialogs for command...
2023-10-11 Ben SoaresJAL-629 Change getdown not to add -open argument
2023-10-11 Ben SoaresJAL-629 Remove argfiles from the hashset of used argfil...
2023-10-11 Ben SoaresJAL-3772 Preference to NOT prompt to save remotely...
2023-10-11 Ben SoaresJAL-4298 Added diagnostics and minor dimension changes...
2023-10-05 Ben SoaresJAL-4298 Fixed initial log level to see .jalview_proper...
2023-10-05 James ProcterMerge branch 'doc/JAL-4090_Release_2_11_3_0' into develop
2023-10-05 James ProcterJAL-4090 JAL-3858 paedocs
2023-10-03 Ben SoaresJAL-4001 Only use acquireDialogQueue and releaseDialogQ... bug/JAL-4001_fix_About_Jalview_not_appearing
2023-10-03 James ProcterJAL-4217 move CommandsTest to testTask3 involving struc...
2023-10-03 James ProcterMerge branch 'patch/JAL-4062_sort_and_merge_contiguousr...
2023-10-03 James ProcterJAL-4090 fix up release notes and what’s new (inc remov...
2023-10-03 James ProcterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
2023-10-03 James ProcterJAL-4061 JAL-4062 update find box image and docs in...
2023-10-03 James ProcterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
2023-10-03 James ProcterMerge branch 'bug/JAL-244_interactingpngexportnotwysiwi...
2023-10-03 James ProcterJAL-4090 tweak pae doc
2023-10-02 jprocterJAL-4090 more JAL-3858 docs
2023-10-02 jprocterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
2023-10-01 James ProcterJAL-4090 JAL-3855 updated figure and doc.. a little bug/JAL-244_interactingpngexportnotwysiwig
2023-10-01 James ProcterJAL-244 ensure background is completely filled with...
2023-10-01 James ProcterJAL-4090 JAL-4291 disable failing test and note as...
2023-10-01 James ProcterJAL-244 attempt to fix broken test - still needs to...
2023-10-01 James ProcterJAL-244 export image with full width IDs regardless...
2023-10-01 James ProcterJAL-244 JAL-4091 allow calculation of label id width...
2023-10-01 James ProcterJAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate...
2023-10-01 James ProcterJAL-4160 update args used in test suite for new CLI...
2023-09-29 James ProcterMerge branch 'bug/JAL-244_interactingpngexportnotwysiwi...
2023-09-29 James ProcterJAL-629 JAL-4265 JAL-4286 report the filename for the...
2023-09-29 James ProcterJAL-4090 JAL-629 FER1+SPIOL -> FER1_SPIOL in command...
2023-09-29 James ProcterJAL-244 JAL-4090 use current IdWidth when exporting...
2023-09-29 James ProcterJAL-4090 figures in paematrix doc
2023-09-29 James ProcterJAL-4288 fix up gradle generated getdown launch jvl...
2023-09-29 James ProcterJAL-4090 fix url to new cli docs
2023-09-29 James ProcterJAL-4153 move JvCacheableInputBoxTest to testTask2
2023-09-29 James ProcterJAL-3858 fix check annotation row and column positionin...
2023-09-28 James ProcterJAL-4090 JAL-3855 figure showing PAEs for epas1 homolog...
2023-09-28 James ProcterJAL-1556 JAL-4090 colour by annotation options on annot...
2023-09-28 James ProcterJAL-3858 don’t divide if we only had one value to count
2023-09-28 James ProcterJAL-3858 check annotation row and column positioning...
2023-09-28 James ProcterJAL-3858 improved contactInterval computation and added...
2023-09-26 James ProcterJAL-3858 JAL-4090 pae matrix docs. WIP
2023-09-26 James ProcterJAL-3858 JAL-4090 avoid NPE when given out of bound...
2023-09-25 James ProcterJAL-3858 JAL-4090 PAE documentation..
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