jalview.git
2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for
2016-09-05 Jim ProcterJAL-2089 update Uniprot to UniProt in help docs.
2016-09-05 Jim ProcterJAL-2089 drop MCView documentation from contents.
2016-09-05 Jim ProcterJAL-1919 revised mmCIF documentation
2016-09-05 Jim ProcterJAL-2089 bump release date for 2.10
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop
2016-09-01 gmungocJAL-2077 don't mess with the look and feel
2016-09-01 gmungocJAL-2077 less drastic exit on close
2016-09-01 Jim ProcterJAL-2034 - remember to reset needsOverviewUpdate at...
2016-09-01 gmungocJAL-2077 test harness for inspecting mouse events
2016-09-01 gmungocJAL-2077 check isPopupTrigger in mouseReleased not...
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch...
2016-09-01 gmungocJAL-1854 rule to disallow import of swing in appletgui
2016-09-01 gmungocJAL-2077 do nothing in mousePressed if right button...
2016-09-01 gmungocJAL-2077 force defer right-click handling to mouseRelea...
2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseC...
2016-08-31 gmungocJAL-2077 more javadoc
2016-08-31 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-08-31 Jim ProcterJAL-2034 fix logic so recalcConservation(true) returns...
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
2016-08-31 Jim ProcterJAL-2034 remove todo - answer is yes!
2016-08-31 gmungocJAL-2077 check for isPopupTrigger() in mousePressed...
2016-08-31 tcofoegbuJAL-2148 further enhancment to CA HETATM processing
2016-08-31 gmungocJAL-1670 repositioned feature for backwards compatibili...
2016-08-30 gmungocJAL-2183 defensive check for openFrameCount < 0 (should...
2016-08-30 gmungocJAL-2183 simplified database tree actionPerformed,...
2016-08-30 gmungocJAL-2183 revised change (= no change)
2016-08-30 gmungocJAL-2183 formatter added @Override (only)
2016-08-30 gmungocJAL-2183 removed redundant (overriden) add panel to...
2016-08-29 gmungocJAL-1854 tweaks to rules and README
2016-08-29 gmungocJAL-1854 checkstyle relocated to /utils, newlines to...
2016-08-29 gmungocMerge branch 'bug/JAL-1841rnaSecStr' into develop
2016-08-29 gmungocJAL-1448 updated unit test for last change
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr
2016-08-29 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-26 gmungocJAL-1854 two more rules, readme notes
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-26 gmungocJAL-1854 commented FallThrough rule
2016-08-26 gmungocJAL-1854 corrected nested package rule
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ...
2016-08-26 gmungocJAL-1854 comment switch case fallthrough
2016-08-25 gmungocJAL-1854 missing case break statements added
2016-08-25 gmungocJAL-1854 initial checkstyle config
2016-08-25 gmungocJAL-2178 remove duplicate Uniprot db source
2016-08-25 gmungocJAL-1424 duplicate key removed
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys
2016-08-24 gmungocJAL-1424 tidy / recode MessageManager calls to support...
2016-08-24 gmungocJAL-1854 removed pointless method override
2016-08-24 gmungocJAL-1424 removed two redundant (overwritten) setText...
2016-08-24 gmungocJAL-1424 corrected Message bundle lookup key
2016-08-24 gmungocJAL-1424 undo i18n of exception message
2016-08-24 gmungocJAL-1854 declare immutable class as final
2016-08-24 gmungocJAL-1424 recode calls to MessageManager to allow code...
2016-08-24 gmungocJAL-2151 port fix to applet
2016-08-24 gmungocJAL-1424 enhanced for cleaner reporting, checks calls...
2016-08-24 gmungocJAL-1424 also report (obsolete) keys in translated...
2016-08-23 gmungocJAL-2176 unused field / methods removed
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection
2016-08-22 gmungocJAL-1448 corrected for backwards compatibility for...
2016-08-22 gmungocJAL-2175 code tidying
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test
2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests
2016-08-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-08-19 tcofoegbuJAL-1803 unit test for PDB chainCode save/restore from...
2016-08-18 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-18 gmungocJAL-2077 using Platform method to check for Ctrl-down
2016-08-18 gmungocJAL-1445 status message '...not containing...' for...
2016-08-18 gmungocJAL-1693 show warning dialog if unable to make CDS...
2016-08-18 gmungocJAL-1855 fail gracefully if XML has no <sequence> element
2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac...
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected()
2016-08-17 gmungocJAL-2146 status message now with formatted residue...
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection
2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link...
2016-08-17 gmungocJAL-2172 handle case where column selection is not...
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-16 gmungocJAL-2172 unit test added
2016-08-16 gmungocJAL-2171 matching bracket default character for rna...
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-15 gmungocJAL-1841 better i18n text
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in...
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in...
2016-08-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of...
2016-08-12 gmungocJAL-1841 count (logo height) is valid pairs only; detec...
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering...
2016-08-12 gmungocJAL-1841, bug fix in rna SS consensus, additions to...
2016-08-12 gmungocJAL-2171 default SS symbol to existing (if present)
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item
2016-08-10 gmungocJAL-2124 i18n of "All" menu item
2016-08-10 gmungocJAL-2146 small optimisation (avoid String creation)
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos...
2016-08-08 gmungocJAL-1577 rebuild menus when secondary structure manuall...
2016-08-08 tcofoegbureplaced broken biojsmsa home link in jalveiw help
2016-08-08 gmungocJAL-2119 replaced link with a non-404 alternative
2016-08-08 gmungocJAL-2168 -nonews option also mentioned here
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