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jalview.git
2012-03-05 jprocter(JAL-942) clearer view structure menu entry commit | commitdiff | tree | snapshot
2012-03-05 jprocterJAL-942 - sensible name on window commit | commitdiff | tree | snapshot
2012-03-05 jprocterJAL-942 - make sure rna structures get a sensible name commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-1052) todo for output of RNA consensus lines commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-1052) basic consensus line parsing to rna structur... commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-1052) make RNA secondary structure string parsing... commit | commitdiff | tree | snapshot
2012-03-02 jprocterformatting commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-942) more tweaking mapping between 2-struct and... commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-842) debug mouseover for sequences that don't... commit | commitdiff | tree | snapshot
2012-03-02 jprocter(JAL-842) todo commit | commitdiff | tree | snapshot
2012-03-02 jprocterremove unnecessary method commit | commitdiff | tree | snapshot
2012-03-02 jprocterefficiency, and ensure mouseover messages originating... commit | commitdiff | tree | snapshot
2012-03-01 jprocter(JAL-842) ensure deletions are accounted for when highl... commit | commitdiff | tree | snapshot
2012-03-01 jprocter(JAL-893) update to VARNAv3.9-dev version commit | commitdiff | tree | snapshot
2012-03-01 jprocterMerge branch 'Release_2_7_Branch' into develop commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalis... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1050) ensure all filenames passed in to the load... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1025 JAL-1022) File based equivalence used to... commit | commitdiff | tree | snapshot
2012-02-12 Jim Procter(JAL-1049) only store state reference for sequence... commit | commitdiff | tree | snapshot
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map... commit | commitdiff | tree | snapshot
2012-02-12 Jim ProcterJAL-715 - remove platform dependent includes commit | commitdiff | tree | snapshot
2012-01-17 jprocterMerge branch 'JAL-1040_jar_manifest_fix' into develop commit | commitdiff | tree | snapshot
2012-01-11 jprocterMerge branch 'JAL-1023_viewall2structsw7' into Release_... commit | commitdiff | tree | snapshot
2012-01-11 jprocterremoved empty lines and fields in manifest like: commit | commitdiff | tree | snapshot
2011-12-08 jprocter(JAL-1023) ensure filename is properly escaped before... commit | commitdiff | tree | snapshot
2011-12-08 jprocterremove commented lines commit | commitdiff | tree | snapshot
2011-12-08 jproctersimple escape utility class for JAL-1023 patch commit | commitdiff | tree | snapshot
2011-11-21 jprocterMerge branch 'JAL-368_dragabovedesktop' into develop commit | commitdiff | tree | snapshot
2011-11-21 jprocterMerge branch 'JAL-368_dragabovedesktop' into Release_2_... commit | commitdiff | tree | snapshot
2011-11-21 jprocter(JAL-368) ensure window never gets a negative Y coordin... commit | commitdiff | tree | snapshot
2011-11-20 jprocterMerge branch 'patch_JAL-1004' into develop commit | commitdiff | tree | snapshot
2011-11-20 jprocterMerge branch 'patch_JAL-1004' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-20 jprocter(JAL-1004) add mouse listener to internal panel commit | commitdiff | tree | snapshot
2011-11-15 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2011-11-15 jproctertodo commit | commitdiff | tree | snapshot
2011-11-14 jprocterJAL-975 - ensure sequences are padded with gaps before... commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws... commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into develop commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-986) rendering to imageMap counts as rendering... commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into develop commit | commitdiff | tree | snapshot
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) documentation and tooltips commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) allow different ID margin calculation... commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) preference widgets for settings commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-985,JAL-986) preferences documentation commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-986) getter for integer user preference properties commit | commitdiff | tree | snapshot
2011-11-09 jprocter(JAL-980) jmol classpath patch commit | commitdiff | tree | snapshot
2011-11-08 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2011-11-08 jprocterfix NPE when no annotation workers present ... commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-974) - remove sun-internal class and use message... commit | commitdiff | tree | snapshot
2011-11-07 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-976,JAL-975) disorder client menu items and check... commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-974,JAL-975) refactor common code for a JABAWS... commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-975) formatting commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-975) ensure AACons is only run on protein sequence... commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) patch netbeans and installAnywhere builds commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into Release_2_7_Branch commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-976) JABAWSv2 client for InstallAnywhere build commit | commitdiff | tree | snapshot
2011-11-03 jproctercleanup imports commit | commitdiff | tree | snapshot
2011-11-03 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2011-11-03 jprocterupdate build notes commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-975) client for amino acid conservation service... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-974,JAL-975) new handler for JABAWS sequence and... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-976) refactored common code for JABAWS v2 service... commit | commitdiff | tree | snapshot
2011-11-03 jproctertidy imports commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-978) discover JABA1 and JABA2 services and generat... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-978) refactored JABAWS2 service handle class to... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-976) upgrade to jabaws-2.0 min-client library commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-812,JAL-811) - generic test for 'calculation invol... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-811) - workers hold references to generated annota... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-812) javadoc and api method to relayout annotation... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot... commit | commitdiff | tree | snapshot
2011-11-03 jprocterensure we have valid fontMetrics - (NPE was raised... commit | commitdiff | tree | snapshot
2011-10-28 jprocterMerge branch 'updaternasecstr_JAL-889' into develop commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-885 - catch race condition when rna structure width... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-885 more efficient calculation and robust for misma... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885 JAL-580) ignore invalid RNA structure lines commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-902 structure conservation row for applet commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-970) interactive editing of RNA helix annotation... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-966) efficiency commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-889) ensure annotation row is revalidated after... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885,JAL-580) structure consensus should only be... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 - display position where wuss parsing error... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date... commit | commitdiff | tree | snapshot
2011-10-28 jprocteruse stack rather than vector and throw parse exceptions commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 ensure WUSS annotation is reparsed if necessary... commit | commitdiff | tree | snapshot
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