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jalview.git
2017-07-12 kiramtJAL-2588 Check/fix show boxes settings + unit test... commit | commitdiff | tree | snapshot
2017-07-12 kiramtJAl-2588 test updates commit | commitdiff | tree | snapshot
2017-07-12 kiramtJAL-2588 Added tests commit | commitdiff | tree | snapshot
2017-07-11 kiramtJAL-2588 (and JAL-2610, JAL-2603) mid refactor commit | commitdiff | tree | snapshot
2017-06-28 kiramtJAL-2603 Putative fix commit | commitdiff | tree | snapshot
2017-06-28 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-06-28 kiramtJAL-2588 Gap colour scheme now shown in overview commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2563 test updated for fix commit | commitdiff | tree | snapshot
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... commit | commitdiff | tree | snapshot
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2418 typos commit | commitdiff | tree | snapshot
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split... commit | commitdiff | tree | snapshot
2017-06-12 kiramtJAL-2591 Updates following code review commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation acros... commit | commitdiff | tree | snapshot
2017-06-11 Jim ProcterJAL-2418 updated release branch/version and release... commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped... commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2588 Consistent gap colour when in None colour... commit | commitdiff | tree | snapshot
2017-06-08 kiramtMerge branch 'bug/JAL-2589gapColour' into feature/2588 commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring commit | commitdiff | tree | snapshot
2017-06-08 kiramtMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586 commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 made redraw volatile commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Overview changes ported to applet commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols commit | commitdiff | tree | snapshot
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff | tree | snapshot
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which... commit | commitdiff | tree | snapshot
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns commit | commitdiff | tree | snapshot
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... commit | commitdiff | tree | snapshot
2017-06-06 kiramtMerge remote-tracking branch 'origin/bug/JAL-2576'... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2590' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2576 release notes commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2588 Naive implementation of gaps as grey in overview commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 updated docs commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 ‘Hide Insertions’ now operates on selection... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 SequenceI.getInsertionsAsBits for convenient... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2578' into develop commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2577' into develop commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'features/JAL-2228_featureSetCounts_minRan... commit | commitdiff | tree | snapshot
2017-06-02 tcofoegbuJAL-2473 revised default minimum dimension for Alignmen... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterJAL-2228 always create zero score annotations, since... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterJAL-2228 always set minimum for count to zero for annot... commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2576 Proposed fix bug/JAL-2576 commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2578 Moved hidden columns reveal to before selectio... bug/JAL-2578 commit | commitdiff | tree | snapshot
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 release notes for JAL-2547, JAL-2563, JAL... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2398 - updated groovy script for direct field modif... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 JAL-2563 release notes commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 typo commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuFixed failing tests commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement commit | commitdiff | tree | snapshot
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly commit | commitdiff | tree | snapshot
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 commit | commitdiff | tree | snapshot
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by... commit | commitdiff | tree | snapshot
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... commit | commitdiff | tree | snapshot
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2388 release notes commit | commitdiff | tree | snapshot
2017-05-29 tcofoegbuJAL-1648 improvement on finder searchbox keyboard contr... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2520 properly documented as a fixed bug in release... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2465,JAL-2520,JAL-2533 release notes commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url commit | commitdiff | tree | snapshot
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... commit | commitdiff | tree | snapshot
2017-05-29 tcofoegbuJAL-1648 code fix - enter key should pick selected... commit | commitdiff | tree | snapshot
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