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jalview.git
2019-06-11 gmungocJAL-3187 CDS has same dataset sequence as transcript commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 save and restore flags for show complement... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 change fields to local variables commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... commit | commitdiff | tree | snapshot
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... commit | commitdiff | tree | snapshot
2019-06-07 Ben SoaresJAL-3225 removing slightly misleading rewrite of .class... commit | commitdiff | tree | snapshot
2019-06-06 Ben SoaresJAL-3225 Classpath now made in eclipse.classpath.file... commit | commitdiff | tree | snapshot
2019-06-06 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... commit | commitdiff | tree | snapshot
2019-06-06 gmungocJAL-3187 deletions (of Castor code) after merge from... commit | commitdiff | tree | snapshot
2019-06-06 gmungocMerge branch 'develop' into trialMerge commit | commitdiff | tree | snapshot
2019-06-06 gmungocJAL-3187 commit to enable merge from develop commit | commitdiff | tree | snapshot
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 correct local file URI for appbase and getdown... commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker commit | commitdiff | tree | snapshot
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker to run in Windo... commit | commitdiff | tree | snapshot
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 error logging if no ##reference found commit | commitdiff | tree | snapshot
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3277 Fixed getdown splashscreen. For unknown reason... commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... commit | commitdiff | tree | snapshot
2019-05-28 Jalview Development... JAL-3247 sign the AppleScript uninstaller commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresJAL-3141 deleted TODO comment in Messages_es commit | commitdiff | tree | snapshot
2019-05-28 Ben SoaresMerge branch 'develop' into task/JAL-3141_JAL-3247_merge commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Object array cast missing commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresMerge branch 'develop' into task/JAL-3247_JAL-3246_JAL... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3247 Added AppleScript based App to run old Jalview... commit | commitdiff | tree | snapshot
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips... commit | commitdiff | tree | snapshot
2019-05-27 gmungocJAL-3141 test file in test folder not examples commit | commitdiff | tree | snapshot
2019-05-25 Ben SoaresJAL-3141 One more error log fix commit | commitdiff | tree | snapshot
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi... commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test commit | commitdiff | tree | snapshot
2019-05-24 gmungocJAL-1988 Spanish typo corrección commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames... commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Fixed tests commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... commit | commitdiff | tree | snapshot
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis... commit | commitdiff | tree | snapshot
2019-05-22 gmungocJAL-3111 help file spelling correction commit | commitdiff | tree | snapshot
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... commit | commitdiff | tree | snapshot
2019-05-21 gmungocJAL-3273 small correction to expected result calculation commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresMerge branch 'task/JAL-3254_improved_max_memory_stack_s... commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresJAL-3247 Unix shell installer and tar archive corrected... commit | commitdiff | tree | snapshot
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... commit | commitdiff | tree | snapshot
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes... commit | commitdiff | tree | snapshot
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 Script to produce auto file association files... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 Note in launcher.log when using a JVL file commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Changed JVL file to be a props file, with... commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Script to automatically install Jalview from... commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Auto generated file associations from jalview... commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 Allowing 'file' protocol URL with empty domain... commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 Code changes to getdown. Double click open... commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 improvements commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 Some getdown image file changes/tidying commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3240 known issue for release notes commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3239 release note commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3244 release note commit | commitdiff | tree | snapshot
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp... commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3244 delete obsolete method commit | commitdiff | tree | snapshot
2019-05-03 Ben SoaresJAL-3247 First attempt at getdown code to add macOS... commit | commitdiff | tree | snapshot
2019-05-03 Ben SoaresJAL-3247 Part way towards adding double-click opening... commit | commitdiff | tree | snapshot
2019-05-02 Ben SoaresJAL-3247 Improved file associations on macOS and Windows commit | commitdiff | tree | snapshot
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps commit | commitdiff | tree | snapshot
2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop commit | commitdiff | tree | snapshot
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows commit | commitdiff | tree | snapshot
2019-05-02 Ben Soaresadding another getdown file (produced during a getdown... commit | commitdiff | tree | snapshot
2019-05-02 Ben SoaresJAL-3247 jvp jvl File associations, JRE variablised... commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresFixed -Djvl=true in install4j JVM invocation commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresExtra JVL file association in the installer. Shadowed... commit | commitdiff | tree | snapshot
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresMerge branch 'task/JAL-3243_PDB_free_text_error' into... commit | commitdiff | tree | snapshot
2019-04-30 Ben SoaresJAL-3243 Replaced javax.ws jar compatible with jersey... task/JAL-3243_PDB_free_text_error commit | commitdiff | tree | snapshot
2019-04-30 Ben SoaresJAL-3196 Correcting the source for getdown (already... commit | commitdiff | tree | snapshot
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil... commit | commitdiff | tree | snapshot
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... commit | commitdiff | tree | snapshot
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterJAL-3236 see also previous commit - tweak the install4j... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresAdded a unixInstaller and unixArchive media-type to... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresRemoving old commented out 'org.gradle.java.home='... commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
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