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jalview.git
2009-08-21 jprocterreversed order of addition of group consensus and conse... commit | commitdiff | tree | snapshot
2009-08-21 jprocterprototype make groups from selection function and shift... commit | commitdiff | tree | snapshot
2009-08-21 jprocterprototype make groups from selection function commit | commitdiff | tree | snapshot
2009-08-21 jprocternew sortbyPID for specific start/end region commit | commitdiff | tree | snapshot
2009-08-21 jprocterrace condition null pointer bugfix commit | commitdiff | tree | snapshot
2009-08-21 jprocterbugfix commit | commitdiff | tree | snapshot
2009-08-21 jproctertodo for 2.5 commit | commitdiff | tree | snapshot
2009-08-21 jprocternull pointer exception bug fix commit | commitdiff | tree | snapshot
2009-08-21 jproctercommented debug lines indicating calculation progress commit | commitdiff | tree | snapshot
2009-08-21 jprocterstart/stop for per-group consensus calculation commit | commitdiff | tree | snapshot
2009-08-21 jprocterstore symbol profile and extract it for display commit | commitdiff | tree | snapshot
2009-08-21 jprocterpir format ambiguity and todo regarding 'format overrid... commit | commitdiff | tree | snapshot
2009-08-21 jprocterbasic implementation of profile display and todos commit | commitdiff | tree | snapshot
2009-08-21 jproctertodo commit | commitdiff | tree | snapshot
2009-08-21 jprocterroutines for creating groups over an alignment commit | commitdiff | tree | snapshot
2009-08-21 jprocterasparagine is polar but not charged commit | commitdiff | tree | snapshot
2009-08-03 jprocterfix feature creation for selected region beyond end... commit | commitdiff | tree | snapshot
2009-07-24 jprocterexplicitly grab all permissions for application executi... commit | commitdiff | tree | snapshot
2009-07-24 jprocterupdate annotation when group state is changed commit | commitdiff | tree | snapshot
2009-07-24 jproctershow group annotation menu entries commit | commitdiff | tree | snapshot
2009-07-24 jproctercolour by label prototype flag commit | commitdiff | tree | snapshot
2009-07-24 jproctercatch null pointer exception in headless context commit | commitdiff | tree | snapshot
2009-07-24 jprocterget consensus sequence and set ignore gaps flag for... commit | commitdiff | tree | snapshot
2009-07-24 jprocterannotation update method synchronises group annotation commit | commitdiff | tree | snapshot
2009-07-24 jprocterheadless warning messages, prototype group annotation... commit | commitdiff | tree | snapshot
2009-07-24 jprocterrefactored conservation thread, added showgroupannotati... commit | commitdiff | tree | snapshot
2009-07-24 jprocterconservation thread refactored from AlignViewport commit | commitdiff | tree | snapshot
2009-07-24 jprocterfeature colour by label flag/style commit | commitdiff | tree | snapshot
2009-07-24 jprocterheadless test commit | commitdiff | tree | snapshot
2009-07-24 jproctertodo commit | commitdiff | tree | snapshot
2009-07-24 jprocterimplement new insert annotation row method and ensure... commit | commitdiff | tree | snapshot
2009-07-24 jprocterinsert annotation at specific position commit | commitdiff | tree | snapshot
2009-07-24 jprocteroptional sequencegroup ref for annotation row commit | commitdiff | tree | snapshot
2009-07-24 jproctersequence groups carry their own conservation and consen... commit | commitdiff | tree | snapshot
2009-07-24 jproctercomplete alignment annotation row procedure commit | commitdiff | tree | snapshot
2009-06-24 jprocterensure annotation row height is honoured for new VAMSAS... commit | commitdiff | tree | snapshot
2009-06-24 jprocterall alignment sequences associated with a dataset seque... commit | commitdiff | tree | snapshot
2009-06-24 jproctercan use whitespace, comma or semicolon to separate IDs commit | commitdiff | tree | snapshot
2009-06-24 jprocterfix to cope with EMBL records containing a CDS fragment... commit | commitdiff | tree | snapshot
2009-06-24 jproctertake the average of the three consecutive codon sites... commit | commitdiff | tree | snapshot
2009-06-19 jprocterimplementation error warning todo commit | commitdiff | tree | snapshot
2009-06-19 jprocterdebug and cyclefix for dbrefs with embedded sequences commit | commitdiff | tree | snapshot
2009-06-19 jprocterjavadoc and datastoreitem registry support for binding... commit | commitdiff | tree | snapshot
2009-06-19 jproctermore efficient synchronized methods commit | commitdiff | tree | snapshot
2009-06-19 jprocterbugfix mapped reference transfer and made picr ID retri... commit | commitdiff | tree | snapshot
2009-06-19 jprocterselection handler and sender bugfix commit | commitdiff | tree | snapshot
2009-06-19 jproctertodo commit | commitdiff | tree | snapshot
2009-06-19 jprocterselections sent when mouse is released (drags on ID... commit | commitdiff | tree | snapshot
2009-06-19 jprocterprogress bars (still need to be threaded properly)... commit | commitdiff | tree | snapshot
2009-06-19 jproctersmoother scroll-to-position action commit | commitdiff | tree | snapshot
2009-06-19 jprocterdrag'n'drop a URL on to an alignment commit | commitdiff | tree | snapshot
2009-06-19 jprocterparent db references and mappings added to retrieved... commit | commitdiff | tree | snapshot
2009-06-19 jprocterintersect did not intersect (used in selection listener) commit | commitdiff | tree | snapshot
2009-06-19 jprocterregex validator for uniprot commit | commitdiff | tree | snapshot
2009-06-19 jprocterusepicr config property commit | commitdiff | tree | snapshot
2009-06-19 jprocterdebug commit | commitdiff | tree | snapshot
2009-06-19 jprocterdebug comments commit | commitdiff | tree | snapshot
2009-06-19 jprocternew coverage comparison - no test case in main method yet commit | commitdiff | tree | snapshot
2009-06-12 jprocterupdated Iclientfactory interface, XMl viewer tests... commit | commitdiff | tree | snapshot
2009-06-12 jproctersynching of all db references and sequence features commit | commitdiff | tree | snapshot
2009-06-12 jprocterprevent dbref->map->to->datasetsequence->dbref-> type... commit | commitdiff | tree | snapshot
2009-06-12 jprocterreinstate links on features commit | commitdiff | tree | snapshot
2009-06-12 jprocterdatastore registration and class cast exception fix commit | commitdiff | tree | snapshot
2009-06-12 jprocterprevent and keep track of which objects handling elemen... commit | commitdiff | tree | snapshot
2009-06-12 jprocternumerous bugfixs (tree panel synchs) and DatastoreRegis... commit | commitdiff | tree | snapshot
2009-06-12 jproctermethods for importing anonymous vamsas documents into... commit | commitdiff | tree | snapshot
2009-06-12 jprocternullpointer bugfix (possibly not needed - was an error... commit | commitdiff | tree | snapshot
2009-06-12 jprocterrecover pdb from jalview-xml in vamsas doc commit | commitdiff | tree | snapshot
2009-06-12 jproctersend selection on drag over sequence ids commit | commitdiff | tree | snapshot
2009-06-12 jprocterretrieve and init vamsas session from vdoc at URL commit | commitdiff | tree | snapshot
2009-06-12 jprocterreinstated blind querying of datasources. Transfer... commit | commitdiff | tree | snapshot
2009-06-12 jproctermore ID validation commit | commitdiff | tree | snapshot
2009-06-12 jprocterjavadoc commit | commitdiff | tree | snapshot
2009-06-10 jproctercom.boxysystems.jgogleanalytics is now an optional... commit | commitdiff | tree | snapshot
2009-06-09 jprocterfix null pointer when new view is created then closed... commit | commitdiff | tree | snapshot
2009-06-09 jprocterfix null pointer when new view created on alignment... commit | commitdiff | tree | snapshot
2009-06-08 jprocteruse structured UA naming for googleanalytics client commit | commitdiff | tree | snapshot
2009-06-08 jprocterupgrade to simple vamsas client version 0.2 (not runtim... commit | commitdiff | tree | snapshot
2009-06-08 jproctertrial of jGA with proper useragent info commit | commitdiff | tree | snapshot
2009-06-08 jprocter*experimental use of picr* apply gpl development license commit | commitdiff | tree | snapshot
2009-06-08 jprocterclargs documentation, new vamsas session import and... commit | commitdiff | tree | snapshot
2009-06-08 jprocterrefactored public methods for non-interactive import... commit | commitdiff | tree | snapshot
2009-06-08 jprocterrefactored for non-interactive import and initiation... commit | commitdiff | tree | snapshot
2009-06-08 jproctersequence scores only shown if they vary. shift stops... commit | commitdiff | tree | snapshot
2009-06-08 jprocterdebug messages and graceful recovery when structure... commit | commitdiff | tree | snapshot
2009-06-08 jprocterbetter thread safety for tooltip. apply gpl development... commit | commitdiff | tree | snapshot
2009-06-08 jprocterensure listeners are deregistered when panel is closed... commit | commitdiff | tree | snapshot
2009-06-08 jprocterensure listeners are deregistered when panel is closed... commit | commitdiff | tree | snapshot
2009-06-08 jprocterga tracker option and apply gpl development license commit | commitdiff | tree | snapshot
2009-06-08 jprocterapply gpl development license commit | commitdiff | tree | snapshot
2009-06-08 jprocterminor optimization. apply gpl development license commit | commitdiff | tree | snapshot
2009-06-08 jprocterpatch for wierd format header lines and apply gpl devel... commit | commitdiff | tree | snapshot
2009-06-08 jprocterga in 2.4.0b2 release commit | commitdiff | tree | snapshot
2009-06-08 jprocternousagestats cli commit | commitdiff | tree | snapshot
2009-06-08 jprocterapply gpl development license and new donotobfuscate... commit | commitdiff | tree | snapshot
2009-06-04 jprocterfull reference added. commit | commitdiff | tree | snapshot
2009-06-04 jprocterspelling commit | commitdiff | tree | snapshot
2009-06-04 jprocterscript goes at beginning of body to allow linkthrus... commit | commitdiff | tree | snapshot
2009-06-02 jprocterupdate minor version of release branch commit | commitdiff | tree | snapshot
2009-06-01 jproctergraduated feature colour documentation commit | commitdiff | tree | snapshot
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