jalview.git
2015-09-16 Jim ProcterMerge branch 'JAL-1612_JAL-1439_JAL-1845_osx_icons_sign...
2015-09-16 Jim ProcterJAL-1612 JAL-1439 JAL-1845 OSX Installers set Xdock...
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with membe...
2015-09-16 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus...
2015-09-16 tcofoegbumerge
2015-09-16 tcofoegbuJAL-1881 Bugfix for annotation import from BioJS
2015-09-16 gmungocJAL-1684 typo correction
2015-09-16 gmungocJAL-1859 removed temporary test copy of pdb file
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils...
2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option
2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger
2015-09-16 gmungocJAL-1859 try 1gaq.txt in /lang so it is in the built jar
2015-09-16 gmungocJAL-1859 debug logging removed
2015-09-16 gmungocJAL-1859 revert to resolving full path to PDB file
2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as...
2015-09-16 gmungocJAL-1859 temporary debug output
2015-09-15 gmungocJAL-1859 use unresolved PDB filename
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase
2015-09-15 gmungocJAL-1859 refactoring / debugging added
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match...
2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle...
2015-09-14 gmungocJAL-1270 test added for separatorListToArray
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
2015-09-11 Jim ProcterJAL-1884 add the JNLP template to jalview_jnlp_vm.jar
2015-09-10 Jim ProcterJAL-1645 fix broken link in docs
2015-09-10 Jim ProcterJAL-1645 reformat help html - 2 spaces indents, no...
2015-09-10 Jim ProcterJAL-1645 licencing for help html
2015-09-10 Jim ProcterJAL-1645 licencing for doc directory files
2015-09-10 Jim ProcterJAL-1645 licencing for groovy files
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the...
2015-09-10 Jim ProcterJAL-1645 add reference seq docs to index/etc
2015-09-10 Jim ProcterJAL-1645 formatting and updated release date
2015-09-10 Jim ProcterJAL-1645 formatting
2015-09-10 Jim ProcterJAL-736 JAL-1645 brief documentation about physicochemi...
2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-10 Jim ProcterJAL-1645 typo
2015-09-10 Jim ProcterJAL-1645 JAL-1595 sort by RNA helices docs
2015-09-10 Jim ProcterJAL-1645 more cross-links and fixing menu entries
2015-09-10 Jim ProcterJAL-1645 links from whats New page
2015-09-10 Jim ProcterJAL-1645 yet more documentation tweaks
2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence...
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence
2015-09-09 Jim ProcterJAL-1645 rejig annotation selection dialog box
2015-09-09 Jim ProcterJAL-1645 rejig biojson/biojsmsa docs
2015-09-09 Jim ProcterJAL-1645 documentation tweaks
2015-09-09 Jim ProcterJAL-1645 rejig bioJSON, export and whats new
2015-09-09 Jim ProcterJAL-1645 relocate developer info about BioJS MSA templa...
2015-09-09 Jim ProcterJAL-1645 update 2.9 docs
2015-09-09 Jim ProcterJAL-1645 JAL-1667 revised PDB sequence fetcher docs
2015-09-09 Jim ProcterJAL-1645 update TOC for 2.9 what’s new
2015-09-09 Jim ProcterJAL-1645 update release note link to v2.9
2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis
2015-09-09 gmungocJAL-857 added debug output to track down document base...
2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for...
2015-09-09 Jim ProcterMerge branch 'release/2_9_documentation' into develop
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used...
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen...
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped...
2015-09-09 Jim ProcterJAL-1645 formatting tree distance docs
2015-09-09 Jim ProcterJAL-1483 more explicit description of feature similarit...
2015-09-09 Jim ProcterJAL-1483 description of the sequence feature based...
2015-09-09 tcofoegbuhouse keeping
2015-09-09 tcofoegbuupdated Biojs msa help doc
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuJAL-1541 doc for biojs msa
2015-09-08 Jim ProcterJAL-1645 Merge branch 'release/2_9_documentation' into...
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1645 defictionalising release notes
2015-09-08 Jim ProcterJAL-1645 first stab at R2.9 “What’s new”
2015-09-08 Jim ProcterJAL-1645 JAL-1701 fix up split frame docs and add a...
2015-09-08 Jim ProcterJAL-1645 incorrect internal doc link
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true...
2015-09-08 tcofoegbuupdated biojson help content
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuupdated helpTOC to include recently added features...
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs)
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo...
2015-09-08 tcofoegbumerge
2015-09-08 tcofoegbuupdated help to include BioJS option in export.html
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
2015-09-08 Jim ProcterJAL-1551 crlf change
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change...
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link
2015-09-08 tcofoegbumerge
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