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2015-03-25 gmungocJAL-1270 System.exit(0) changed to fail() so as not... commit | commitdiff | tree | snapshot
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into Release_2_... commit | commitdiff | tree | snapshot
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff | tree | snapshot
2015-03-06 Jim Procterreassign features already created/documented for 2... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources bug/JAL-1643_File-chooser-improvement commit | commitdiff | tree | snapshot
2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into... commit | commitdiff | tree | snapshot
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions... commit | commitdiff | tree | snapshot
2015-02-27 Jim Procterfix for JAL-1678 commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 document changed behaviour commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 typecast commit | commitdiff | tree | snapshot
2015-02-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... commit | commitdiff | tree | snapshot
2015-02-05 Charles Ofoegbumerge commit commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number commit | commitdiff | tree | snapshot
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default... commit | commitdiff | tree | snapshot
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 added null check for sequence description... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge commit commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 improvment of finder logic to include the... commit | commitdiff | tree | snapshot
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... commit | commitdiff | tree | snapshot
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToR... commit | commitdiff | tree | snapshot
2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature... commit | commitdiff | tree | snapshot
2015-01-27 gmungocJAL-1588 new class renamed commit | commitdiff | tree | snapshot
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... commit | commitdiff | tree | snapshot
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session... commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 crlf changes commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 formatting/imports commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 source code formatting commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... commit | commitdiff | tree | snapshot
2015-01-22 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... commit | commitdiff | tree | snapshot
2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_I... commit | commitdiff | tree | snapshot
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... commit | commitdiff | tree | snapshot
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles Ofoegbuclean up commit | commitdiff | tree | snapshot
2015-01-20 Charles Ofoegbuclean up commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuFurther abstractions and clean up commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles Ofoegbubasic house keeping commit | commitdiff | tree | snapshot
2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structu... commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 formatting commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions... commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in... commit | commitdiff | tree | snapshot
2015-01-18 Jim Procteralways use interface rather than field access commit | commitdiff | tree | snapshot
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence commit | commitdiff | tree | snapshot
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save... commit | commitdiff | tree | snapshot
2015-01-14 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... commit | commitdiff | tree | snapshot
2015-01-14 Charles OfoegbuModified AnnotationColumnChooser to maintain state... features/JAL-1553_select-columns-by-annotation commit | commitdiff | tree | snapshot
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... commit | commitdiff | tree | snapshot
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh... commit | commitdiff | tree | snapshot
2015-01-10 Charles OfoegbuJAL-1553 merge commit commit | commitdiff | tree | snapshot
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati... commit | commitdiff | tree | snapshot
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