jalview.git
2009-08-21 jprocterreversed order of addition of group consensus and conse...
2009-08-21 jprocterprototype make groups from selection function and shift...
2009-08-21 jprocterprototype make groups from selection function
2009-08-21 jprocternew sortbyPID for specific start/end region
2009-08-21 jprocterrace condition null pointer bugfix
2009-08-21 jprocterbugfix
2009-08-21 jproctertodo for 2.5
2009-08-21 jprocternull pointer exception bug fix
2009-08-21 jproctercommented debug lines indicating calculation progress
2009-08-21 jprocterstart/stop for per-group consensus calculation
2009-08-21 jprocterstore symbol profile and extract it for display
2009-08-21 jprocterpir format ambiguity and todo regarding 'format overrid...
2009-08-21 jprocterbasic implementation of profile display and todos
2009-08-21 jproctertodo
2009-08-21 jprocterroutines for creating groups over an alignment
2009-08-21 jprocterasparagine is polar but not charged
2009-08-03 jprocterfix feature creation for selected region beyond end...
2009-07-24 jprocterexplicitly grab all permissions for application executi...
2009-07-24 jprocterupdate annotation when group state is changed
2009-07-24 jproctershow group annotation menu entries
2009-07-24 jproctercolour by label prototype flag
2009-07-24 jproctercatch null pointer exception in headless context
2009-07-24 jprocterget consensus sequence and set ignore gaps flag for...
2009-07-24 jprocterannotation update method synchronises group annotation
2009-07-24 jprocterheadless warning messages, prototype group annotation...
2009-07-24 jprocterrefactored conservation thread, added showgroupannotati...
2009-07-24 jprocterconservation thread refactored from AlignViewport
2009-07-24 jprocterfeature colour by label flag/style
2009-07-24 jprocterheadless test
2009-07-24 jproctertodo
2009-07-24 jprocterimplement new insert annotation row method and ensure...
2009-07-24 jprocterinsert annotation at specific position
2009-07-24 jprocteroptional sequencegroup ref for annotation row
2009-07-24 jproctersequence groups carry their own conservation and consen...
2009-07-24 jproctercomplete alignment annotation row procedure
2009-06-24 jprocterensure annotation row height is honoured for new VAMSAS...
2009-06-24 jprocterall alignment sequences associated with a dataset seque...
2009-06-24 jproctercan use whitespace, comma or semicolon to separate IDs
2009-06-24 jprocterfix to cope with EMBL records containing a CDS fragment...
2009-06-24 jproctertake the average of the three consecutive codon sites...
2009-06-19 jprocterimplementation error warning todo
2009-06-19 jprocterdebug and cyclefix for dbrefs with embedded sequences
2009-06-19 jprocterjavadoc and datastoreitem registry support for binding...
2009-06-19 jproctermore efficient synchronized methods
2009-06-19 jprocterbugfix mapped reference transfer and made picr ID retri...
2009-06-19 jprocterselection handler and sender bugfix
2009-06-19 jproctertodo
2009-06-19 jprocterselections sent when mouse is released (drags on ID...
2009-06-19 jprocterprogress bars (still need to be threaded properly)...
2009-06-19 jproctersmoother scroll-to-position action
2009-06-19 jprocterdrag'n'drop a URL on to an alignment
2009-06-19 jprocterparent db references and mappings added to retrieved...
2009-06-19 jprocterintersect did not intersect (used in selection listener)
2009-06-19 jprocterregex validator for uniprot
2009-06-19 jprocterusepicr config property
2009-06-19 jprocterdebug
2009-06-19 jprocterdebug comments
2009-06-19 jprocternew coverage comparison - no test case in main method yet
2009-06-12 jprocterupdated Iclientfactory interface, XMl viewer tests...
2009-06-12 jproctersynching of all db references and sequence features
2009-06-12 jprocterprevent dbref->map->to->datasetsequence->dbref-> type...
2009-06-12 jprocterreinstate links on features
2009-06-12 jprocterdatastore registration and class cast exception fix
2009-06-12 jprocterprevent and keep track of which objects handling elemen...
2009-06-12 jprocternumerous bugfixs (tree panel synchs) and DatastoreRegis...
2009-06-12 jproctermethods for importing anonymous vamsas documents into...
2009-06-12 jprocternullpointer bugfix (possibly not needed - was an error...
2009-06-12 jprocterrecover pdb from jalview-xml in vamsas doc
2009-06-12 jproctersend selection on drag over sequence ids
2009-06-12 jprocterretrieve and init vamsas session from vdoc at URL
2009-06-12 jprocterreinstated blind querying of datasources. Transfer...
2009-06-12 jproctermore ID validation
2009-06-12 jprocterjavadoc
2009-06-10 jproctercom.boxysystems.jgogleanalytics is now an optional...
2009-06-09 jprocterfix null pointer when new view is created then closed...
2009-06-09 jprocterfix null pointer when new view created on alignment...
2009-06-08 jprocteruse structured UA naming for googleanalytics client
2009-06-08 jprocterupgrade to simple vamsas client version 0.2 (not runtim...
2009-06-08 jproctertrial of jGA with proper useragent info
2009-06-08 jprocter*experimental use of picr* apply gpl development license
2009-06-08 jprocterclargs documentation, new vamsas session import and...
2009-06-08 jprocterrefactored public methods for non-interactive import...
2009-06-08 jprocterrefactored for non-interactive import and initiation...
2009-06-08 jproctersequence scores only shown if they vary. shift stops...
2009-06-08 jprocterdebug messages and graceful recovery when structure...
2009-06-08 jprocterbetter thread safety for tooltip. apply gpl development...
2009-06-08 jprocterensure listeners are deregistered when panel is closed...
2009-06-08 jprocterensure listeners are deregistered when panel is closed...
2009-06-08 jprocterga tracker option and apply gpl development license
2009-06-08 jprocterapply gpl development license
2009-06-08 jprocterminor optimization. apply gpl development license
2009-06-08 jprocterpatch for wierd format header lines and apply gpl devel...
2009-06-08 jprocterga in 2.4.0b2 release
2009-06-08 jprocternousagestats cli
2009-06-08 jprocterapply gpl development license and new donotobfuscate...
2009-06-04 jprocterfull reference added.
2009-06-04 jprocterspelling
2009-06-04 jprocterscript goes at beginning of body to allow linkthrus...
2009-06-02 jprocterupdate minor version of release branch
2009-06-01 jproctergraduated feature colour documentation
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