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jalview.git
2014-11-25 Jim ProcterMerge branch 'patch_JAL-689' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-25 Jim Procterback out duplicate jfree classpath entry commit | commitdiff | tree | snapshot
2014-11-25 Charles OfoegbuMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-25 Charles Ofoegbumerge commit features/JAL-1469_svg-output-for-figure-export commit | commitdiff | tree | snapshot
2014-11-25 Charles OfoegbuJAL-1469 Added SVGOptions.java for lineart/text renderi... commit | commitdiff | tree | snapshot
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ... commit | commitdiff | tree | snapshot
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_... commit | commitdiff | tree | snapshot
2014-11-23 Jim Procteremploy test and secondary structure character for deter... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 refactoring of stockholm test commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annot... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA commit | commitdiff | tree | snapshot
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector commit | commitdiff | tree | snapshot
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow... commit | commitdiff | tree | snapshot
2014-11-21 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1569 formatting commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna... commit | commitdiff | tree | snapshot
2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and disti... commit | commitdiff | tree | snapshot
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character... commit | commitdiff | tree | snapshot
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value... commit | commitdiff | tree | snapshot
2014-11-20 Jim ProcterJAL-1569 remove log output during RNA secondary structu... commit | commitdiff | tree | snapshot
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL> commit | commitdiff | tree | snapshot
2014-11-19 Charles OfoegbuMerge branch 'bug/JAL-1522_include-installation-details... commit | commitdiff | tree | snapshot
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output commit | commitdiff | tree | snapshot
2014-11-18 Charles OfoegbuMerge branch 'bug/JAL-998_wrap-sequence-tooltip' into... commit | commitdiff | tree | snapshot
2014-11-18 Charles Ofoegbumodified classpath commit | commitdiff | tree | snapshot
2014-11-18 Charles OfoegbuJAL-998 tooltip wrapping commit | commitdiff | tree | snapshot
2014-11-18 gmungocJAL-1349 rebuild Web Service menu after add/delete... commit | commitdiff | tree | snapshot
2014-11-18 gmungocJAL-1582 removing finalize() as may have unexpected... commit | commitdiff | tree | snapshot
2014-11-18 gmungocJAL-1582 quicker tooltip on service presets (and code... commit | commitdiff | tree | snapshot
2014-11-18 gmungocJAL-1349 refresh menu presets after 'create' new commit | commitdiff | tree | snapshot
2014-11-18 gmungocJAL-1580 Chimera path tooltip, removed focusListener commit | commitdiff | tree | snapshot
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into Release_2_... commit | commitdiff | tree | snapshot
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... commit | commitdiff | tree | snapshot
2014-11-18 Jim ProcterJAL-674 JAL-1512 JAL-1333 documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1517 JAL-1587 JAL-674 secondary structure and annot... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1517 release notes for 2.8.2 commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuUndo changes to JabaWsServerQuery.java commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuUndo changes to JabaWsServerQuery.java commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1573 unit test added to verify Help target enum... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1581 Tooltip slimmed down, Help button added on... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 distinct calc IDs for JPredMSA and Jpred singl... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 propagate results of JABA sequence based predi... commit | commitdiff | tree | snapshot
2014-11-17 Jim Procterimports and formatting commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 propagate JPred annotation from legacy jpred... commit | commitdiff | tree | snapshot
2014-11-17 Jim Procterformatting commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset... commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1043_warning-dialog-not-shown... commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuJAL-1043 patch to show warning dialog when webservice... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1586 chimera file chooser added, validate on OK... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1469 help documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1469 help documentation commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbuupdated documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282 commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1580 size parameters dialog to height of Desktop commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuJAL-1570 patch to enable adding a webservice which... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies commit | commitdiff | tree | snapshot
2014-11-13 Charles Ofoegbuadded jfreesvg dependency to class path commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbuhouse-keeping commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuAdded support for SVG Export commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 javadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping... commit | commitdiff | tree | snapshot
2014-11-11 gmungocJAL-1527 opening a project saved with JMol should use... commit | commitdiff | tree | snapshot
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