jalview.git
2014-10-14 gmungocJAL-1551 CRLF handling
2014-10-10 Jim ProcterJAL-674 employ new signature in Annotate3D service...
2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when...
2014-10-10 Jim ProcterJAL-674 typo
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating...
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure...
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing...
2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into Release_2_8_2_Branch
2014-10-09 Jim Procterpatch fixes JAL-1558
2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into Release_2_8_2_Branch
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about...
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double...
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list
2014-10-07 Jim ProcterJAL-1151 source tidy
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release...
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into JAL-429_phylip-file...
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into Release_2_8_2_Branch
2014-10-06 Jim ProcterJAL-848 reinstate netbeans files from Phylip patch...
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release...
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into Release_2_8...
2014-10-06 Jim ProcterJAL-1286 missing file for testcase where file ends...
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs...
2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into Release_2_8_2_...
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific...
2014-10-06 Jim ProcterJAL-654 updated pdb db fetcher test to verify the numbe...
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is...
2014-10-06 Jim ProcterJAL-654 format and refactor test demonstrating PDB...
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot...
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch_i18n' into Release_2...
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message...
2014-10-03 Charles Ofoegburemoved local test data
2014-10-03 Charles OfoegbuLocal branch test
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_...
2014-10-03 Jim ProcterMerge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch
2014-10-03 Jim ProcterJAL-1338 note added #fridaycommits not actually connect...
2014-10-03 Jim ProcterMerge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch
2014-10-03 Jim ProcterJAL-1499 simple test to check JABA client can
2014-09-27 darolmarJAL-1355
2014-09-26 darolmarJAL-1355
2014-09-23 darolmarJAL-1355
2014-09-19 darolmarJAL-1428
2014-09-19 darolmarJAL-1355
2014-09-19 darolmarSpanish translation spikes/jims_test
2014-09-19 darolmarJAL-1355
2014-09-18 gmungocMerge branch 'JAL-1360_Branch' into Release_2_8_2_Branch
2014-09-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-09-18 gmungocJAL-1360 tweaks to match help page conventions, size...
2014-09-18 gmungocJAL-1360 consistent (bold) help page headings
2014-09-18 gmungocJAL-1360 Javadoc, Vector replaced with ArrayList, code...
2014-09-18 gmungocJAL-1360 Javadoc/JUnit
2014-09-18 gmungocJAL-1360 refactored utility method to ColorUtils class
2014-09-18 gmungocJAL-1544 it's --> its
2014-09-17 gmungocJAL-1360 updates to online help for user define colour...
2014-09-17 gmungocCorrect colour for text when colour set
2014-09-17 gmungocJAL-1360 refactored for consistent lighter/darker for
2014-09-17 gmungocJAL-1360 workaround for user defined colours display...
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected...
2014-09-12 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' of https://source...
2014-09-12 j.procter@dundee... Merge branch 'bug/JAL-1486_flatfile' into Release_2_8_2...
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-...
2014-09-12 j.procter@dundee... formatting and organise imports
2014-09-12 j.procter@dundee... JAL-1486 fix: pass selected region to jalview.io via...
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd...
2014-09-12 j.procter@dundee... JAL-1486 JAL-535 refactor code for trimming alignment...
2014-09-12 j.procter@dundee... JAL-535 tidy interface definition and documentation
2014-09-12 gmungocJAL-1516 handle null annotations
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview...
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
2014-07-22 j.procter@dundee... JAL-1333 fix imports
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
2014-07-22 j.procter@dundee... JAL-1333 log4j/slf additional jars
2014-07-22 j.procter@dundee... JAL-1333 add log4j-slf4j bridge
2014-07-22 j.procter@dundee... Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
2014-07-22 j.procter@dundee... JAL-1333 finessing log4j and slf dependencies for struc...
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope...
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock...
2014-07-18 j.procter@dundee... JAL-1379 Jpred JABA client test harness
2014-07-18 j.procter@dundee... JAL-1333 allow reuse of existing chimera for new or...
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible...
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present
2014-07-18 j.procter@dundee... ensure the dataset is instantiated before materialising...
2014-07-18 j.procter@dundee... JAL-1379 new look JPred results
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA...
2014-07-18 j.procter@dundee... JAL-1028 JAL-1142 refactor test to allow reuse of secon...
2014-07-08 j.procter@dundee... JAL-1333 allow reuse of existing viewers (of a specifie...
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working...
2014-07-03 j.procter@dundee... Merge branch 'Release_2_8_2_Branch' into features/JAL...
2014-07-03 j.procter@dundee... Merge branch 'hotfix/JAL-1530' into Release_2_8_2_Branch
2014-07-03 Jim Procterfixes JAL-1530
2014-07-02 Jim Procterrevalidate appears to have gone away ?? (java 1.7 upgra...
2014-07-02 Jim Procterformatting
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-07-02 Jim ProcterJAL-1333 test suite for key functionality of java inter...
2014-07-02 Jim Procter JAL-1333 Chimera specific code extracted from the...
next