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jalview.git
2016-11-07
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-07
gmungoc
JAL-1270 renamed helper method so it is not run as...
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2016-11-07
gmungoc
JAL-2272 another test case
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2016-11-07
gmungoc
JAL-1805 groups=Functional added where missing
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2016-11-07
gmungoc
JAL-2272 unit tests added for Platform.isControlDown
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2016-11-07
gmungoc
JAL-2318 updated help text
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2016-11-07
gmungoc
JAL-2282 show url links that need checked; remove ...
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2016-11-07
gmungoc
JAL-2295 handle no progress bar message properly
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2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
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2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
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2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-04
kiramt
JAL-2315 Clear sequenceURLLinks if all sequence links...
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2016-11-04
tcofoegbu
JAL-2292 squashed bug that breaks feature mapping for...
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2016-11-04
tcofoegbu
JAL-2292 added javadoc for compareChar(..) utility...
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2016-11-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-04
tcofoegbu
JAL-2195 JAL-2262 house keeping
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2016-11-04
tcofoegbu
JAL-2292 fix for wrong mapping output in sequence mappi...
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2016-11-04
tcofoegbu
JAL-2292 Wrote utility method for comparing two char...
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2016-11-04
tcofoegbu
JAL-2292 Unit test for utility method for comparing...
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2016-11-04
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-04
kiramt
JAL-2282 Better check for existing url links
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2016-11-04
gmungoc
JAL-2272 right mouse button on Mac is not Cmd equivalent!
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2016-11-04
kiramt
JAL-2282 Remove Cache dependency from applet
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2016-11-04
kiramt
JAL-2282 Message box stays on top at Jalview open;...
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2016-11-04
gmungoc
JAL-966 JAL-1854 removed redundant methods / modifiers...
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2016-11-04
gmungoc
JAL-2302 unit tests added for Finder
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2016-11-03
kiramt
JAL-2282 Link menu disabled if there are no valid links
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2016-11-03
kiramt
JAL-2282 Updated warn.url_must_contain
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2016-11-03
kiramt
JAL-2282 If checkbox on warning dialog is unclicked...
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2016-11-03
kiramt
JAL-2281 Back out unit test update, as Mungo already...
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2016-11-03
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2016-11-03
kiramt
JAL-2308 Fixed hiddenColsTest
bug/JAL-2308
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2016-11-03
tcofoegbu
JAL-2312 unit test for bug fix - repeated mapping gener...
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2016-11-03
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-11-03
tcofoegbu
JAL-2312 Bug fix for repeated mapping generation from...
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2016-11-03
gmungoc
JAL-2310 don't double-count sequence matches; code...
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2016-11-03
gmungoc
JAL-2281 test added to show searchRefs is now not case...
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2016-11-03
kiramt
JAL-2281 Minor unit test addition
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2016-11-03
gmungoc
JAL-2295 step 1 new menu item to transfer Jalview attri...
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2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-02
kiramt
JAL-2281 Unit test updates
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2016-11-02
Jim Procter
JAL-345 JAL-1738 menu item, AlignFrame action listener...
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2016-11-02
kiramt
Merge remote-tracking branch 'origin/bug/JAL-2282'...
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2016-11-02
Jim Procter
JAL-1738 JAL-345 fix test - method appears to work
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2016-11-02
gmungoc
JAL-2301 table formatted, and corrected to match the...
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2016-11-02
Jim Procter
JAL-1738 JAL-345 fix for JAL-2302 only report Matches...
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2016-11-02
Jim Procter
JAL-1738 JAL-345 switch expected/observed in test
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2016-11-02
kiramt
JAL-2281 Use DBRefs.selectRefs to uppercase URL link...
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2016-11-02
Jim Procter
JAL-345 JAL-1738 fix test (still passes)
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2016-11-02
kiramt
JAL-2282 Refactor applet too
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2016-11-02
kiramt
JAL-2282 Updated and checked messages, English and...
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2016-11-02
Jim Procter
JAL-345 javadoc and note about JAL-2300
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2016-11-02
kiramt
JAL-2282 Updated help documentation
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2016-11-02
Jim Procter
JAL-354 JAL-1738 add returns SearchResultMatchI instanc...
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2016-11-02
Jim Procter
JAL-966 JAL-345 JAL-1738 decontaminate SearchResultI...
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2016-11-02
Jim Procter
JAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit...
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2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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2016-11-02
gmungoc
JAL-98 test updated for percentage rounded
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2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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2016-11-02
gmungoc
JAL-98 wording "negatively conserved" now "absence...
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2016-11-02
kiramt
JAL-2282 Code tidy
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2016-11-02
kiramt
JAL-2282 Renamed internal use of sequence id / db acces...
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2016-11-02
kiramt
JAL-2282 URLLink unit tests updated
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2016-11-01
Jim Procter
JAL-1738 JAL-345 failing test for mark columns
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2016-11-01
Jim Procter
JAL-345 JAL-1738 strengthen test for cardinalty count...
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2016-11-01
Jim Procter
JAL-345 JAL-1738 typo
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2016-11-01
Jim Procter
JAL-1738 JAL-345 fix broken calculation of newly marked...
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2016-11-01
Jim Procter
JAL-345 JAL-1738 new tests (failing) for SearchResultsI...
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2016-11-01
Jim Procter
JAL-1738 JAL-345 trivial tests for relocated SearchResu...
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2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
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2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
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2016-11-01
gmungoc
JAL-98 typo in javadoc
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2016-11-01
gmungoc
JAL-98 simplified repeat() method
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2016-11-01
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-11-01
tcofoegbu
JAL-2280 refactored and improved structure file identif...
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2016-11-01
kiramt
JAL-2282 Refactor SequenceAnnotationReport to use refac...
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2016-11-01
kiramt
JAL-2282 Merge
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2016-11-01
kiramt
JAL-2282 Changed DB accession id token to $DB_ACCESSION...
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2016-11-01
kiramt
JAL-2282 Refactored URL link creation into UrlLink
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2016-11-01
kiramt
JAL-2282 Removed unexpected ; from code
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2016-11-01
kiramt
JAL-2282 Force double-clicking to use sequence_id cases...
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2016-10-31
gmungoc
JAL-98 round when formatting dec places
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2016-10-31
gmungoc
JAL-1723 ellipsis in tooltip if xrefs to more than...
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2016-10-31
gmungoc
Merge branch 'develop' into features/JAL-1723_sequenceR...
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2016-10-31
kiramt
Force double-clicking to use sequence_id cases and...
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2016-10-31
kiramt
Updated messages.
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2016-10-31
kiramt
Use ACCESSION_ID for database accession id, and SEQUENC...
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2016-10-30
Jim Procter
JAL-1738 JAL-345 new controller method based on mark...
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2016-10-30
Jim Procter
JAL-345 JAL-1738 SearchResultI method to mark columns...
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2016-10-30
Jim Procter
JAL-966 clarify javadoc for SearchResultsI.getResults
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2016-10-28
Jim Procter
JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
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2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
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2016-10-27
gmungoc
JAL-2282 test assertions for 'other' dbsource
spikes/geoff
spikes/jpred
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2016-10-27
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-10-27
tcofoegbu
JAL-2280 Improvement to enable drag'n'drop association...
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2016-10-27
gmungoc
JAL-98 refactor bleachColour() to ColorUtils
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2016-10-27
gmungoc
JAL-2287 treat Escape like Cancel in dialog box
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2016-10-26
gmungoc
JAL-2287 Cancel option on Close Chimera? dialog
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