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2015-11-13 Jim ProcterJAL-1965 test asserts no partial word matches can be... commit | commitdiff | tree | snapshot
2015-11-13 Jim ProcterJAL-1965 fencepost patch makes wordSplit test pass
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2015-11-13 Jim ProcterJAL-1965 refactored SeqIdName to public class, and... commit | commitdiff | tree | snapshot
2015-11-13 Jim ProcterJAL-1965 formatting commit | commitdiff | tree | snapshot
2015-11-13 Jim ProcterJAL-1965 hang onto original string so best match (inclu... commit | commitdiff | tree | snapshot
2015-11-13 Jim ProcterJAL-1965 word based matching and explicit coping with... commit | commitdiff | tree | snapshot
2015-11-12 Jim ProcterJAL-1965 case insensitive & word matching SequenceIdMat... commit | commitdiff | tree | snapshot
2015-11-12 Jim ProcterJAL-1965 tests for word and case insensitive matching commit | commitdiff | tree | snapshot
2015-11-12 Jim ProcterJAL-753_JAL-1427 basic test cases for SequenceIdMatcher commit | commitdiff | tree | snapshot
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous... commit | commitdiff | tree | snapshot
2015-11-11 tcofoegbumerge of SIFTs Branch commit | commitdiff | tree | snapshot
2015-11-11 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping commit | commitdiff | tree | snapshot
2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to... commit | commitdiff | tree | snapshot
2015-11-06 gmungocJAL-1946 unit tests (and comments) for PID() function commit | commitdiff | tree | snapshot
2015-11-06 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping commit | commitdiff | tree | snapshot
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... commit | commitdiff | tree | snapshot
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor commit | commitdiff | tree | snapshot
2015-10-30 Jim ProcterMerge branch 'JAL-1954_pfamformatbroke' into develop commit | commitdiff | tree | snapshot
2015-10-30 Jim ProcterJAL-1954 rejigged PFAMFile to split on ‘\t’ if no space... commit | commitdiff | tree | snapshot
2015-10-30 Jim ProcterJAL-1954 formatting commit | commitdiff | tree | snapshot
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... commit | commitdiff | tree | snapshot
2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasVali... commit | commitdiff | tree | snapshot
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... commit | commitdiff | tree | snapshot
2015-10-28 tcofoegbuJAL-1952 bugfix commit | commitdiff | tree | snapshot
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... commit | commitdiff | tree | snapshot
2015-10-28 gmungocJAL-1946 additional unit test cases for PID calculation commit | commitdiff | tree | snapshot
2015-10-23 gmungocJAL-1943 don't try to unmarshal non-xml files in V1... commit | commitdiff | tree | snapshot
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... commit | commitdiff | tree | snapshot
2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman... commit | commitdiff | tree | snapshot
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor commit | commitdiff | tree | snapshot
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... commit | commitdiff | tree | snapshot
2015-10-16 Jim ProcterJAL-1925 version change commit | commitdiff | tree | snapshot
2015-10-16 Jim ProcterJAL-1925 update what's new and release notes commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 remove blanket sign of examples/*.jar commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 id rather than name attrib commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 sign the applet with/out timestamps commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 add explicit proxy for benefit of jalview... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 fix ant target dependencies commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 make timestamping optional using -Dtimestamp commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp... commit | commitdiff | tree | snapshot
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterMerge branch 'bug/JAL-1923_290b2_group_annots' into... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1923 formatting commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice commit | commitdiff | tree | snapshot
2015-10-14 tcofoegbuJAL-1926 created interface for DBRefEntry commit | commitdiff | tree | snapshot
2015-10-14 tcofoegbuJAL-1926 added supporting model changes to enable savin... commit | commitdiff | tree | snapshot
2015-10-13 tcofoegbuJAL-1479 added SIFTS XSD and generated JAXB bindings... commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and... commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 add licensing commit | commitdiff | tree | snapshot
2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 update what's new commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated commit | commitdiff | tree | snapshot
2015-10-08 gmungocJAL-1544 typo fix commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 formatting commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 organise imports commit | commitdiff | tree | snapshot
2015-10-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1894 source formatting commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1894 organise imports commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1894 update release date commit | commitdiff | tree | snapshot
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1912 formatting commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current... commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per... commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence... commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1912 house keeping commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable... commit | commitdiff | tree | snapshot
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterJAL-1894 note about menu option bugfix JAL-1865 JAL... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterJAL-1894 update release notes for JAL-1815 JAL-1860 commit | commitdiff | tree | snapshot
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1908 bugfix commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that... commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1726 updated test error msg commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo commit | commitdiff | tree | snapshot
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... commit | commitdiff | tree | snapshot
2015-10-02 Jim ProcterJAL-1900 JAL-1625 disable iconify button for internal... commit | commitdiff | tree | snapshot
2015-10-01 Jim ProcterJAL-1894 release notes update and 6th October release... commit | commitdiff | tree | snapshot
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added... commit | commitdiff | tree | snapshot
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1860 house keeping commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB... commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1852 disable querying of unpublished PDB entries... commit | commitdiff | tree | snapshot
2015-09-30 Jim Procterfix for JAL-1883 commit | commitdiff | tree | snapshot
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... commit | commitdiff | tree | snapshot
2015-09-28 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... commit | commitdiff | tree | snapshot
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after... commit | commitdiff | tree | snapshot
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