jalview.git
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient...
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of...
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc...
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types...
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota...
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions...
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann...
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat...
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into...
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row
2017-05-03 gmungocJAL-2246 test a Uniprot fetch
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value...
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when...
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value...
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox
2017-05-03 Jim ProcterJAL-2432 simplify code
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection...
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons...
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for...
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout
2017-05-02 gmungocJAL-1933 Spanish for Occupancy
2017-05-02 Jim ProcterJAL-2424 fixme’s removed
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising...
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d)
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop
2017-05-02 gmungocJAL-2499 inlined two 1-line methods
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-05-01 tcofoegbuJAL-2482 bug fix
2017-05-01 tcofoegbuJAL-2482 unit test for bug fix
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-05-01 gmungocMerge remote-tracking branch
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show... features/JAL-1933_occupancy
2017-04-27 Jim ProcterJAL-1933 patch jalview/io/testProps.jvprops to show...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 don't show occupancy row when testing conserva...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter
2017-04-27 Jim ProcterJAL-1933 desktop documentation for show occupancy prefe...
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa...
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy
2017-04-27 Jim ProcterJAL-1933 action and label for occupancy
2017-04-27 Jim ProcterJAL-1933 test for SHOW_OCCUPANCY .jalview_properties...
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment...
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA...
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line...
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
2017-04-27 Jim ProcterJAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
2017-04-27 Jim ProcterMerge branch 'features/JAL-1933_occupancy' into develop
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres...
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide...
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for...
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ...
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts
2017-04-27 Jim ProcterMerge branch 'develop' into features/JAL-1933_occupancy
2017-04-25 tcofoegbuJAL-2489 edited unit test code comment
2017-04-25 tcofoegbuJAL-2489 Unit test for bug
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-04-25 tcofoegbuJAL-2489 bug fix
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread...
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped...
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row...
2017-04-21 gmungocJAL-2295 Spanish translations for superposition / errors
2017-04-21 gmungocJAL-2295 Spanish translations added
2017-04-21 gmungocJAL-2361 Spanish text added
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header...
2017-04-19 tcofoegbuJAL-2482 added null check
2017-04-18 tcofoegbuJAL-2482 Bugfix
2017-04-17 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-12 gmungocJAL-2361 tweak layout of warning message
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree...
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable
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