jalview.git
2017-07-28 gmungocJAL-2631 make minimum colour not white
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou...
2017-07-28 gmungocJAL-2631 add graduated colour kdH features to example
2017-07-24 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring...
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly
2017-07-18 Jim ProcterJAL-2432 updated documentation for select/hide by annot...
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi...
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment!
2017-07-17 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
2017-07-17 gmungocJAL-1648 JAL-2447 Spanish translations
2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapp...
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo...
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation
2017-07-05 gmungocJAL-147 don't update overview for column selection...
2017-07-05 gmungocJAL-147 additions to unit test, check for negative...
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first...
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide...
2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show...
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide...
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin...
2017-07-04 gmungocJAL-147 extract local variable for ease of debugging
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView
2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids
2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol...
2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode
2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id...
2017-06-30 gmungocJAL-2602 unit test added
2017-06-30 gmungocJAL-147 don't page up above origin, repaint ids for...
2017-06-30 gmungocMerge branch 'bug/JAL-2597' into develop
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
2017-06-30 gmungocJAL-2602 same fix for applet
2017-06-30 Jim ProcterMerge branch 'bugs/JAL-2606_broken_jabaws22_IADependenc...
2017-06-30 Jim ProcterJAL-2606 updated IA build for changed dependency due...
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview...
2017-06-29 kiramtJAL-2597 Fix and unit test bug/JAL-2597
2017-06-29 gmungocJAL-2605 exclude left/right scale in sequence column...
2017-06-28 gmungocMerge branch 'bug/JAL-2600resizeflicker' into develop
2017-06-28 kiramtJAL-2600 Tidies bug/JAL-2600resizeflicker
2017-06-28 kiramtJAL-2600 updates following review
2017-06-27 kiramtJAL-2600 Tidies
2017-06-27 kiramtJAL-2600 Abandoned fastpaint for resize; now full repai...
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi...
2017-06-27 kiramtJAL-2600 Add in IdCanvas and checks for 0 size images
2017-06-27 kiramtJAL-2600 vertical fast paint too
2017-06-27 kiramtJAL-2600 fast painting on resize
2017-06-26 kiramtJAL-2600 reinstate original behaviour
2017-06-15 gmungocJAL-2563 test updated for fix
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring...
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591
2017-06-15 gmungocJAL-2418 typos
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop
2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split...
2017-06-12 kiramtJAL-2591 Updates following code review
2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation acros...
2017-06-11 Jim ProcterJAL-2418 updated release branch/version and release...
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour
2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped...
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring
2017-06-08 kiramtMerge branch 'bug/JAL-2586' into develop
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586
2017-06-08 kiramtJAL-2591 made redraw volatile
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea...
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing.
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete)
2017-06-07 kiramtJAL-2591 More refactoring (incomplete)
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string...
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio...
2017-06-07 kiramtJAL-2591 Overview changes ported to applet
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied...
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update...
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which...
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin...
2017-06-06 kiramtMerge remote-tracking branch 'origin/bug/JAL-2576'...
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-06-05 Jim ProcterJAL-2590 release notes
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2590' into develop
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi...
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-06-05 Jim ProcterJAL-2576 release notes
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2586' into develop
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall...
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance
2017-06-04 Jim ProcterJAL-2291 updated docs
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre...
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take...
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1)
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio...
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