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jalview.git
2017-07-28 gmungocJAL-2631 make minimum colour not white commit | commitdiff | tree | snapshot
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou... commit | commitdiff | tree | snapshot
2017-07-28 gmungocJAL-2631 add graduated colour kdH features to example commit | commitdiff | tree | snapshot
2017-07-24 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring... commit | commitdiff | tree | snapshot
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly commit | commitdiff | tree | snapshot
2017-07-18 Jim ProcterJAL-2432 updated documentation for select/hide by annot... commit | commitdiff | tree | snapshot
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView commit | commitdiff | tree | snapshot
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi... commit | commitdiff | tree | snapshot
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment! commit | commitdiff | tree | snapshot
2017-07-17 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView commit | commitdiff | tree | snapshot
2017-07-17 gmungocJAL-1648 JAL-2447 Spanish translations commit | commitdiff | tree | snapshot
2017-07-06 gmungocJAL-147 prevent vertical Overview box movement in wrapp... commit | commitdiff | tree | snapshot
2017-07-06 gmungocJAL-147 unit test for hide/show sequences update Viewpo... commit | commitdiff | tree | snapshot
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation commit | commitdiff | tree | snapshot
2017-07-05 gmungocJAL-147 don't update overview for column selection... commit | commitdiff | tree | snapshot
2017-07-05 gmungocJAL-147 additions to unit test, check for negative... commit | commitdiff | tree | snapshot
2017-07-05 gmungocJAL-147 prevent overview box move up over hidden first... commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 revised update of startSeq, endSeq on unhide... commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 unit tests added, unused setEndRes removed commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 corrected update of ViewportRanges for show... commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 update ViewportRanges height after show/hide... commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin... commit | commitdiff | tree | snapshot
2017-07-04 gmungocJAL-147 extract local variable for ease of debugging commit | commitdiff | tree | snapshot
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView commit | commitdiff | tree | snapshot
2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids commit | commitdiff | tree | snapshot
2017-07-03 gmungocJAL-147 don't scroll Overview box outside panel dimensions commit | commitdiff | tree | snapshot
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol... commit | commitdiff | tree | snapshot
2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode commit | commitdiff | tree | snapshot
2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id... commit | commitdiff | tree | snapshot
2017-06-30 gmungocJAL-2602 unit test added commit | commitdiff | tree | snapshot
2017-06-30 gmungocJAL-147 don't page up above origin, repaint ids for... commit | commitdiff | tree | snapshot
2017-06-30 gmungocMerge branch 'bug/JAL-2597' into develop commit | commitdiff | tree | snapshot
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class commit | commitdiff | tree | snapshot
2017-06-30 gmungocJAL-2602 same fix for applet commit | commitdiff | tree | snapshot
2017-06-30 Jim ProcterMerge branch 'bugs/JAL-2606_broken_jabaws22_IADependenc... commit | commitdiff | tree | snapshot
2017-06-30 Jim ProcterJAL-2606 updated IA build for changed dependency due... commit | commitdiff | tree | snapshot
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview... commit | commitdiff | tree | snapshot
2017-06-29 kiramtJAL-2597 Fix and unit test bug/JAL-2597 commit | commitdiff | tree | snapshot
2017-06-29 gmungocJAL-2605 exclude left/right scale in sequence column... commit | commitdiff | tree | snapshot
2017-06-28 gmungocMerge branch 'bug/JAL-2600resizeflicker' into develop commit | commitdiff | tree | snapshot
2017-06-28 kiramtJAL-2600 Tidies bug/JAL-2600resizeflicker commit | commitdiff | tree | snapshot
2017-06-28 kiramtJAL-2600 updates following review commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 Tidies commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 Abandoned fastpaint for resize; now full repai... commit | commitdiff | tree | snapshot
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 Add in IdCanvas and checks for 0 size images commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 vertical fast paint too commit | commitdiff | tree | snapshot
2017-06-27 kiramtJAL-2600 fast painting on resize commit | commitdiff | tree | snapshot
2017-06-26 kiramtJAL-2600 reinstate original behaviour commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2563 test updated for fix commit | commitdiff | tree | snapshot
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... commit | commitdiff | tree | snapshot
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 commit | commitdiff | tree | snapshot
2017-06-15 gmungocJAL-2418 typos commit | commitdiff | tree | snapshot
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split... commit | commitdiff | tree | snapshot
2017-06-12 kiramtJAL-2591 Updates following code review commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation acros... commit | commitdiff | tree | snapshot
2017-06-11 Jim ProcterJAL-2418 updated release branch/version and release... commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped... commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring commit | commitdiff | tree | snapshot
2017-06-08 kiramtMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586 commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 made redraw volatile commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing. commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 More refactoring (incomplete) commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Overview changes ported to applet commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols commit | commitdiff | tree | snapshot
2017-06-07 gmungocJAL-2386 ensure group conservation shading is applied... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update... commit | commitdiff | tree | snapshot
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff | tree | snapshot
2017-06-06 kiramtJAL-2591 Removed getHiddenRegions()==null checks which... commit | commitdiff | tree | snapshot
2017-06-06 kiramtJAL-2591 Added readwrite locking on HiddenColumns commit | commitdiff | tree | snapshot
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... commit | commitdiff | tree | snapshot
2017-06-06 kiramtMerge remote-tracking branch 'origin/bug/JAL-2576'... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2590' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2576 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 updated docs commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio... commit | commitdiff | tree | snapshot
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