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jalview.git
2007-08-30 jproctermoved dataset sequence creation onto sequence method commit | commitdiff | tree | snapshot
2007-08-30 jproctercreate dataset sequence method commit | commitdiff | tree | snapshot
2007-08-30 jprocterremoved autogenerated todo commit | commitdiff | tree | snapshot
2007-08-30 jprocterupdated source generation for castor-1.1-cycle patched commit | commitdiff | tree | snapshot
2007-08-30 jprocteradded aligned codon frames, and dataset reference ids... commit | commitdiff | tree | snapshot
2007-08-29 jprocterapplet and application menu entry differences and conse... commit | commitdiff | tree | snapshot
2007-08-24 jprocterdataset alignments have a reference count which must... commit | commitdiff | tree | snapshot
2007-08-24 jprocterremove null pointer exception when embl file is not... commit | commitdiff | tree | snapshot
2007-08-24 jproctertodo comments commit | commitdiff | tree | snapshot
2007-08-23 jprocterproper vamsas style binding of alignment sequence objec... commit | commitdiff | tree | snapshot
2007-08-23 jprocterslightly faster validation patch (logging message conca... commit | commitdiff | tree | snapshot
2007-08-23 jprocterbugfixed and removed some inefficiencies in marshalling commit | commitdiff | tree | snapshot
2007-08-22 jprocterpopup for non-fatal tree parsing error commit | commitdiff | tree | snapshot
2007-08-22 jprocterquick fix for exceptions due to invalid embl refs commit | commitdiff | tree | snapshot
2007-08-22 jprocterfix serious repetitive exceptions if user closes colour... commit | commitdiff | tree | snapshot
2007-08-22 jproctercatch occasional -ve imgWidth exception commit | commitdiff | tree | snapshot
2007-08-22 jprocteradded failsafe fix for cases where null sequence names... commit | commitdiff | tree | snapshot
2007-08-22 jprocterintroduce beginning of bug fix for parsing atv style... commit | commitdiff | tree | snapshot
2007-08-22 jprocteradded facility for sending non-fatal warnings back... commit | commitdiff | tree | snapshot
2007-08-13 jprocterfixed typo in new 2_3 startup file default value commit | commitdiff | tree | snapshot
2007-08-08 jproctergive treeviewer description its own contents entry... commit | commitdiff | tree | snapshot
2007-08-08 jproctergeneralise name of prediction method commit | commitdiff | tree | snapshot
2007-08-08 jprocterensure default source dist is relative to basedir of... commit | commitdiff | tree | snapshot
2007-08-08 jprocterallow source dist archive to be an absolute filename commit | commitdiff | tree | snapshot
2007-08-08 jprocteradded source-dist task commit | commitdiff | tree | snapshot
2007-08-08 jprocterhistidine should be midblue (noticed by Peter Knight... commit | commitdiff | tree | snapshot
2007-08-06 jproctercomment concerning null exceptions generated when annot... commit | commitdiff | tree | snapshot
2007-08-06 jprocternull pointer exception blocked redraw of annotation... commit | commitdiff | tree | snapshot
2007-08-02 jprocterjavadoc and bugfix for 'save' when jalview is default... commit | commitdiff | tree | snapshot
2007-08-02 jprocterupdated vamsas library (version for iscb demo) commit | commitdiff | tree | snapshot
2007-08-01 jprocterignore contents of this directory commit | commitdiff | tree | snapshot
2007-08-01 jprocteradded the '-tree' parameter to open a tree from the... commit | commitdiff | tree | snapshot
2007-08-01 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-08-01 jprocterensure current dataset reference is passed to the cross... commit | commitdiff | tree | snapshot
2007-08-01 jprocteradded tree as an applet to application servlet parameter commit | commitdiff | tree | snapshot
2007-08-01 jprocternull pointer exception bug fix commit | commitdiff | tree | snapshot
2007-07-31 jprocterdebugging cross references and duplicate sequence db... commit | commitdiff | tree | snapshot
2007-07-30 jproctertest cc change revoked. commit | commitdiff | tree | snapshot
2007-07-30 jproctertest cc commit | commitdiff | tree | snapshot
2007-07-30 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-07-30 jprocterproperty for including debug info in classes commit | commitdiff | tree | snapshot
2007-07-25 jproctertodo comment commit | commitdiff | tree | snapshot
2007-07-25 jprocterfix crossRef retrieval so either protein OR nucleotide commit | commitdiff | tree | snapshot
2007-07-25 jprocteruniprot synonym commit | commitdiff | tree | snapshot
2007-07-25 jprocterbetter vamsas tree io (for when there are no nodemappings) commit | commitdiff | tree | snapshot
2007-07-25 jprocterbugfix for vamsas demo commit | commitdiff | tree | snapshot
2007-07-25 jprocterIO rearrangement for AMSAFile output commit | commitdiff | tree | snapshot
2007-07-25 jprocterbugfix for vamsas demo and IO rearrangement for AMSAFil... commit | commitdiff | tree | snapshot
2007-07-13 jprocterignore random stuff to do with eclipse commit | commitdiff | tree | snapshot
2007-07-13 jprocterpreliminary IO classes - read javadoc for purpose commit | commitdiff | tree | snapshot
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas... commit | commitdiff | tree | snapshot
2007-07-13 jprocterrefactor commit | commitdiff | tree | snapshot
2007-07-13 jprocternew DBRef management and generalised source and entry... commit | commitdiff | tree | snapshot
2007-07-13 jproctermore semantic groupings of dbs commit | commitdiff | tree | snapshot
2007-07-13 jprocterdebugged mappings and translated sequence recovery commit | commitdiff | tree | snapshot
2007-07-13 jprocterpreliminary states for pca distribution io commit | commitdiff | tree | snapshot
2007-07-13 jprocterpreliminary methods for detecting internal sequence... commit | commitdiff | tree | snapshot
2007-07-13 jprocterbugfix commit | commitdiff | tree | snapshot
2007-07-13 jproctermapping bug fixes commit | commitdiff | tree | snapshot
2007-07-13 jprocterbasic idea for recognising that a feature is a coding... commit | commitdiff | tree | snapshot
2007-07-13 jprocterbugfixes, partially working code for translation using... commit | commitdiff | tree | snapshot
2007-07-13 jproctercomments for future viz/detection of internal sequence... commit | commitdiff | tree | snapshot
2007-07-13 jprocterupdated to iscb demo vamsas-client version commit | commitdiff | tree | snapshot
2007-07-13 jprocterrefactored form of vamsas document interaction code commit | commitdiff | tree | snapshot
2007-07-13 jproctermethods for traversing database reference space commit | commitdiff | tree | snapshot
2007-07-13 jprocternew search method for finding references like other... commit | commitdiff | tree | snapshot
2007-07-13 jprocterbugfix and comments commit | commitdiff | tree | snapshot
2007-07-13 jproctermoved to castor-1.1-cycle - a specially patched version... commit | commitdiff | tree | snapshot
2007-06-18 jprocterensure lines are drawn from first alignment column. commit | commitdiff | tree | snapshot
2007-06-18 jprocter1.1 methods commit | commitdiff | tree | snapshot
2007-06-17 jproctervamsas-client-1.2 schema (mappings and Treenodes) and... commit | commitdiff | tree | snapshot
2007-06-17 jproctervamsas mouseOvers commit | commitdiff | tree | snapshot
2007-06-17 jprocterenable mouseover between DNA coding regions and transla... commit | commitdiff | tree | snapshot
2007-06-17 jprocterenable mouseover between DNA coding regions and transla... commit | commitdiff | tree | snapshot
2007-06-17 jprocterfix aligned DNA codon translation bug(s) and generate... commit | commitdiff | tree | snapshot
2007-06-17 jprocterrecovery of identical dataset sequence object on undo... commit | commitdiff | tree | snapshot
2007-06-17 jprocterAlignedCodonFrame holds mapping information between... commit | commitdiff | tree | snapshot
2007-06-17 jprocterfix modeller generated PDB file reading bug (missing... commit | commitdiff | tree | snapshot
2007-06-17 jprocterJnetFIle is a readable format commit | commitdiff | tree | snapshot
2007-06-17 jprocterscore only annotation IO commit | commitdiff | tree | snapshot
2007-06-17 jproctermouseOver highlighting and broadcasting efficiency commit | commitdiff | tree | snapshot
2007-06-17 jprocterthread safety during repaint commit | commitdiff | tree | snapshot
2007-06-17 jprocternull pointer exception fix commit | commitdiff | tree | snapshot
2007-06-17 jproctersearchresult highlighting on common dataset or specific... commit | commitdiff | tree | snapshot
2007-06-17 jproctercorrect construction of new dataset sequence when resid... commit | commitdiff | tree | snapshot
2007-06-17 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-06-04 jprocterfix for 'RF' annotation tags and ensured parser is... commit | commitdiff | tree | snapshot
2007-05-28 jprocterprototype DBRef and Feature Type semantics (for annotat... commit | commitdiff | tree | snapshot
2007-05-28 jproctermoved castor-mapping.xsd to schemas commit | commitdiff | tree | snapshot
2007-05-28 jprocterjalview source development documentation commit | commitdiff | tree | snapshot
2007-05-28 jprocterfix compact annotation array routine commit | commitdiff | tree | snapshot
2007-05-28 jproctercastor mapping file schema (for mappings in resources... commit | commitdiff | tree | snapshot
2007-05-28 jproctermapping file change for castor-1.1 upgrade commit | commitdiff | tree | snapshot
2007-05-28 jproctercastor mapping unmarshalling logging commit | commitdiff | tree | snapshot
2007-05-28 jprocterloglevel property constants and castor validation logge... commit | commitdiff | tree | snapshot
2007-05-24 jproctercastor-1.1 classes (descriptors moved to subpackage) commit | commitdiff | tree | snapshot
2007-05-24 jproctercastor-1.1 compatible classes from ant task commit | commitdiff | tree | snapshot
2007-05-24 jprocterjalview 2.0 XML schema versions for backwards compatibi... commit | commitdiff | tree | snapshot
2007-05-24 jprocterNew file for /homes/www-jalview commit | commitdiff | tree | snapshot
2007-05-22 jprocterfixed jalview 2.3 bug where gapped aligned codons were... commit | commitdiff | tree | snapshot
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