jalview.git
2019-04-23 Jim ProcterJAL-3130 make sure only libDistDir/*.jar are added...
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change...
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown...
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown channel structure is {build...
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile...
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile...
2019-04-22 Jim ProcterJAL-3224 JAL-3196 specify file object in projectFile...
2019-04-22 Jim ProcterJAL-3130 JAL-3224 patch URL paths to point to jalview...
2019-04-22 Jim ProcterJAL-3130 provide absolute module path as J11 compile...
2019-04-22 Jim ProcterMerge branch 'jims/JAL-3130_Java11_Gradle_publishing...
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection...
2019-04-18 gmungocJAL-1793 basic help text for VCF option
2019-04-18 gmungocJAL-3111 additional release notes
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top
2019-04-18 gmungocJAL-3111 release notes first pass complete
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not...
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt...
2019-04-18 gmungocJAL-2620 updated help page to mention alternative genet...
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL"
2019-04-17 Jim ProcterJAL-3111 fix 2.11 html anchor in docs
2019-04-17 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into...
2019-04-17 Jim ProcterJAL-3111 Jalview 2.11 what’s New and estimated release...
2019-04-17 Jim ProcterJAL-3111 tweak PCA documentation
2019-04-17 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele...
2019-04-17 Ben SoaresJAL-3224 Add commons-compress-1.18.jar
2019-04-17 Ben SoaresJAL-3224 Bundling appropriate Mac OS/Windows JRE as...
2019-04-17 Ben SoaresJAL-3224 New version of getdown which will cope with...
2019-04-16 Ben SoaresJAL-3130 moved resources/install4j to utils/install4j
2019-04-16 Jim ProcterJAL-3130 tidy up system.output jims/JAL-3130_Java11_Gradle_publishing
2019-04-16 Jim ProcterJAL-3130 call Jalview via the Test JVM’s JAVA_HOME...
2019-04-16 Jim ProcterJAL-3130 refactored ‘clover’ to ‘use_clover’ since...
2019-04-16 Jim ProcterJAL-3130 JAL-1889 reportCurrentWorkingDirectory test...
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine...
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine...
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine...
2019-04-16 Jim ProcterJAL-3196 change default are resource properties to...
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken...
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests
2019-04-15 Ben SoaresJAL-3130 Somewhere in the old libs the Jws2 client...
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when...
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle...
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence...
2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt...
2019-04-14 Jim ProcterJAL-3130 write clover.xml during cloverReport phase
2019-04-14 Jim ProcterJAL-3130 make sure testng-results.xml is generated
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview...
2019-04-12 Jim ProcterJAL-3130 instrument main and compile separately to...
2019-04-12 Jim ProcterJAL-3130 gradle test now runs open clover 4.3.1 and...
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves...
2019-04-11 Jim ProcterJAL-3130 ensure J11 libs/modules are added when buildin...
2019-04-11 Jim ProcterJAL-3130 clean up eclipse class path for dependencies...
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
2019-04-10 gmungocJAL-3018 REST version updated to 10.0
2019-04-05 Ben SoaresJAL-3130 adapted getdown src
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG...
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -...
2019-04-04 Ben SoaresJAL-3130 JAL-3007 more files needed for getdown launcher
2019-04-04 Ben SoaresJAL-3130 JAL-3007 improvements to gradle build
2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top
2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel... bug/JAL-3218scalePanelPopups
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11. Now...
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
2019-03-29 gmungocJAL-3140 InstallAnywhere updated to intervalstore-v1...
2019-03-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2019-03-29 gmungocJAL-3140 intervalstore now v1.0 (public release)
2019-03-29 Jim ProcterJAL-3111 Disable the pubapplet target in build.xml...
2019-03-28 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2019-03-28 Jim ProcterJAL-3111 biojava dependencies
2019-03-28 Jim ProcterJAL-3111 fix libquagua dependency paths - needs to...
2019-03-28 Jim ProcterJAL-3111 fix jabaws dependency name in IA config
2019-03-28 Jim ProcterJAL-3111 intervalstore library on IA classpath
2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org...
2019-03-28 Jim ProcterJAL-3111 typo in IA config
2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org...
2019-03-28 gmungocJAL-1889 patch for failing isControDown test on build...
2019-03-28 Jim ProcterJAL-3111 update InstallAnywhere dependencies for change...
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop
2019-03-27 gmungocJAL-2620 improved error reporting on failure to load...
2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned...
2019-03-25 gmungocJAL-3127 scripts updated for method signature change
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite
2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout()
2019-03-22 Ben SoaresJAL-3130 adding two more modules picked up by gradle...
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ...
2019-03-22 gmungocJAL-1889 more debug logging
2019-03-21 gmungocJAL-1889 better debug logging
2019-03-21 gmungocJAL-1889 temporary debug in findColumn()
2019-03-21 gmungocJAL-1889 added belt and braces deleteOnExit() to test...
2019-03-21 gmungocJAL-1889 correct props param, remove dasserver, output...
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with...
2019-03-21 gmungocJAL-1889 more diagnostics for CommandLineOperations
2019-03-21 gmungocJAL-1889 diagnostics for failing test on server
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip
2019-03-20 gmungocJAL-3212 unit test and fix for Scale Panel bug
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules...
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
2019-03-18 Ben SoaresJAL-3130 removing no longer needed JRE (going to use...
2019-03-18 Ben SoaresJAL-3130 Removing accidentally committed tmp dir
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