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jalview.git
2014-10-15
Jim Procter
Merge branch 'jims_crlf_hell_JAL-1551' of https://sourc...
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2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
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2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
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2014-10-13
gmungoc
JAL-1264 unneeded setup removed
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2014-10-13
gmungoc
JAL-1264 unit test corrected
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2014-10-12
gmungoc
JAL-1544 SEQENCE -> SEQUENCE
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2014-10-12
gmungoc
JAL-1264 help updates for show/hide annotations on
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2014-10-10
gmungoc
JAL-1551 project-specific settings
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2014-10-10
gmungoc
JAL-1551 proposed project settings for code cleanup...
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2014-10-10
gmungoc
JAL-1264 unit tests
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2014-10-10
gmungoc
Suppressed test that needs user interaction to allow...
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2014-10-10
gmungoc
JAL-1551 CRLF handling
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2014-10-10
gmungoc
JAL-1264 show/hide annotations, plus merged changes
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2014-10-10
gmungoc
JAL-1481 wrap tooltip in html
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2014-10-10
gmungoc
JAL-1264 added getAlignmentAnnotations(calcId, label)
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2014-10-10
gmungoc
JAL-1264 reverted (removed added method)
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2014-10-08
gmungoc
Merge branch 'Release_2_8_2_Branch' into
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2014-10-07
gmungoc
JAL-1264 wip
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2014-10-07
gmungoc
JAL-1554 handle left-then-right click on sequence id
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2014-10-06
Jim Procter
Merge branch 'JAL-429_phylip-file-support' into Release...
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2014-10-06
Jim Procter
Merge branch 'patch/JAL-848' into JAL-429_phylip-file...
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2014-10-06
Jim Procter
Merge branch 'patch/JAL-848' into Release_2_8_2_Branch
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2014-10-06
Jim Procter
JAL-848 reinstate netbeans files from Phylip patch...
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2014-10-06
Jim Procter
Merge branch 'JAL-429_phylip-file-support' into Release...
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2014-10-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
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2014-10-06
Jim Procter
Merge branch 'patch/JAL-1286_JAL-1265' into Release_2_8...
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2014-10-06
Jim Procter
JAL-1286 missing file for testcase where file ends...
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2014-10-06
Jim Procter
JAL-1500 JAL-1265 patch to parse PDB database refs...
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2014-10-06
Jim Procter
Merge branch 'feature/JAL-654_dssp' into Release_2_8_2_...
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2014-10-06
Jim Procter
JAL-654 remove any annotation rows for chain specific...
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2014-10-06
Jim Procter
JAL-654 updated pdb db fetcher test to verify the numbe...
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2014-10-06
Jim Procter
JAL-654 JAL-1264 sequence associated annotation is...
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2014-10-06
Jim Procter
JAL-654 format and refactor test demonstrating PDB...
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2014-10-06
Jim Procter
JAL-1115 TODO remove use of java.util.Vector
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2014-10-06
Jim Procter
JAL-654 javadoc createDatasetSequence and transferAnnot...
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2014-10-06
Jim Procter
JAL-654_dssp formatting and javadoc
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2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
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2014-10-03
Jim Procter
Merge branch 'Release_2_8_2_Branch_i18n' into Release_2...
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2014-10-03
Jim Procter
JAL-1355 removed all top level html tags from message...
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2014-10-03
gmungoc
JAL-1264 javadoc update
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2014-10-03
gmungoc
JAL-1264 show/hide annotations; JAL-1481 Find tooltip
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2014-10-03
gmungoc
JAL-1506 delete all warning; JAL-1264 show/hide annotations
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2014-10-03
gmungoc
JAL-1264 refactored show/hide annotation types includin...
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2014-10-03
gmungoc
JAL-1481 search expression validation
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2014-10-03
gmungoc
JAL-1506 correct exit on close align frame
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2014-10-03
gmungoc
JAL-914 don't open help window twice
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2014-10-03
gmungoc
JAL-1264 show/hide annotations, JAL-1481 search validat...
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2014-10-03
Charles Ofoegbu
removed local test data
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2014-10-03
Charles Ofoegbu
Local branch test
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2014-10-03
Jim Procter
Merge branch 'Release_2_8_2_Branch' into Release_2_8_2_...
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2014-10-03
Jim Procter
Merge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch
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2014-10-03
Jim Procter
JAL-1338 note added #fridaycommits not actually connect...
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2014-10-03
Jim Procter
Merge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch
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2014-10-03
Jim Procter
JAL-1499 simple test to check JABA client can
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2014-09-27
darolmar
JAL-1355
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2014-09-26
darolmar
JAL-1355
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2014-09-25
gmungoc
JAL-1264 tidy up use of MouseListener for showHideAnnot...
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2014-09-25
gmungoc
JAL-1264 alternative (popup menu) way to show/hide...
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2014-09-24
gmungoc
JAL-1264 further refactoring of panel + unit tests
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2014-09-23
darolmar
JAL-1355
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2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
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2014-09-19
darolmar
JAL-1428
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2014-09-19
darolmar
JAL-1355
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2014-09-19
darolmar
Spanish translation
spikes/jims_test
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2014-09-19
darolmar
JAL-1355
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2014-09-18
gmungoc
Merge branch 'JAL-1360_Branch' into Release_2_8_2_Branch
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2014-09-18
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
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2014-09-18
gmungoc
JAL-1360 tweaks to match help page conventions, size...
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2014-09-18
gmungoc
JAL-1360 consistent (bold) help page headings
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2014-09-18
gmungoc
JAL-1360 Javadoc, Vector replaced with ArrayList, code...
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2014-09-18
gmungoc
JAL-1360 Javadoc/JUnit
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2014-09-18
gmungoc
JAL-1360 refactored utility method to ColorUtils class
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2014-09-18
gmungoc
JAL-1544 it's --> its
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2014-09-17
gmungoc
JAL-1360 updates to online help for user define colour...
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2014-09-17
gmungoc
Correct colour for text when colour set
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2014-09-17
gmungoc
JAL-1360 refactored for consistent lighter/darker for
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2014-09-17
gmungoc
JAL-1360 workaround for user defined colours display...
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2014-09-15
gmungoc
JAL-1542 script to show aligned positions of selected...
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2014-09-12
j.procter@dundee...
Merge branch 'Release_2_8_2_Branch' of https://source...
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2014-09-12
j.procter@dundee...
Merge branch 'bug/JAL-1486_flatfile' into Release_2_8_2...
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2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
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2014-09-12
j.procter@dundee...
formatting and organise imports
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2014-09-12
j.procter@dundee...
JAL-1486 fix: pass selected region to jalview.io via...
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2014-09-12
j.procter@dundee...
JAL-1199 add stockholm output to list of AppletFormatAd...
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2014-09-12
j.procter@dundee...
JAL-1486 JAL-535 refactor code for trimming alignment...
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2014-09-12
j.procter@dundee...
JAL-535 tidy interface definition and documentation
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2014-09-12
gmungoc
JAL-1516 handle null annotations
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2014-09-12
j.procter@dundee...
JAL-1516 Annotation row score output script for jalview...
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2014-07-22
j.procter@dundee...
Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
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2014-07-22
j.procter@dundee...
JAL-1333 fix imports
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2014-07-22
j.procter@dundee...
Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
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2014-07-22
j.procter@dundee...
JAL-1333 log4j/slf additional jars
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2014-07-22
j.procter@dundee...
JAL-1333 add log4j-slf4j bridge
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2014-07-22
j.procter@dundee...
Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
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2014-07-22
j.procter@dundee...
JAL-1333 finessing log4j and slf dependencies for struc...
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2014-07-22
j.procter@dundee...
JAL-1333 JAL-1533 todo to get Chimera superposing prope...
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2014-07-22
j.procter@dundee...
JAL-1333 more superposition debugging and deadlock...
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2014-07-18
j.procter@dundee...
JAL-1379 Jpred JABA client test harness
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2014-07-18
j.procter@dundee...
JAL-1333 allow reuse of existing chimera for new or...
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2014-07-18
j.procter@dundee...
JAL-1333 more refinements - deadlocks still possible...
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