jalview.git
2005-06-02 amwaterhouseCheck startup file is not null
2005-06-02 jprocterminor changes to make jalopy happy
2005-06-02 jprocterminor changes to try and make jalopy happy
2005-05-31 jprocterMoved comment so it doesn't break jalopy (this is not...
2005-05-30 jprocteradded the sorting entry to calculations, and corrected...
2005-05-30 jprocterChanged sortByPID to use the gapped PID function.
2005-05-30 jproctercomments
2005-05-30 jprocterAdded clustalW 'realignment' (primitive)
2005-05-30 jprocteradded default ClustalWS or MuscleWS to remove gaps.
2005-05-30 jprocterpropagated use of jalview.util.GapChars for gap removal.
2005-05-30 jproctermore robust parsing for DBset/DBname|id1|id2 type ids
2005-05-30 jproctermodified history for redundancy removal.
2005-05-30 jprocterfixed stacktrace potential for pairwise alignment action.
2005-05-30 jprocterModified output on stdout for similarity matrix.
2005-05-27 amwaterhouseimages moved
2005-05-27 jprocterfixed brain interruption bug.
2005-05-27 amwaterhouseignores blank lines read in and write out
2005-05-27 jprocterright ordering for RedundancyPanel constructor
2005-05-27 jprocteradded proper state check for failedJob flag.
2005-05-27 jprocterAdded jobFail state
2005-05-27 jprocterbetter recognition of MSF files.
2005-05-27 amwaterhouseAdded menus
2005-05-27 amwaterhouseedits
2005-05-27 amwaterhouseimage moved
2005-05-27 amwaterhousepref
2005-05-27 amwaterhousemenus
2005-05-27 amwaterhouseImage moved
2005-05-27 amwaterhouseidentity changed
2005-05-27 amwaterhouseCut and paste menus added
2005-05-27 amwaterhouseCut and paste changes
2005-05-27 amwaterhouseC&P changes
2005-05-27 amwaterhouseCheck if colos are null
2005-05-27 amwaterhouseCut and paste changes
2005-05-27 amwaterhouseAdd cut and paste menus
2005-05-27 amwaterhouseCutAndPaste changed
2005-05-27 jprocterAdded nicer header formatting for MSFfile output.
2005-05-27 jprocterrecovered changes from v 1.84
2005-05-27 amwaterhouseCheck if usrCol is null
2005-05-27 amwaterhouseNew cut and paste
2005-05-27 jprocterJpredfile now uses the PileUpfile io class.
2005-05-27 jprocterAddred GapChar string for convenient regex construction
2005-05-27 jprocterResponse to bug mantis?id=8187 - some quick hacks to...
2005-05-27 amwaterhouseRemove desc for conserve graph
2005-05-27 jprocterOld MSF Format writer now renamed.
2005-05-26 jprocterfixed use of PID rather than 'Comparison' Alignment...
2005-05-26 jprocterfairly pointless catch exception error information...
2005-05-26 jprocterfixed redundancy Undo and allowed it to work on UNALIGN...
2005-05-26 jprocterbug fix in jpred client. TreeViewer display state and...
2005-05-26 jprocterpartially updated help. Added separate treeviewing...
2005-05-26 amwaterhousecheck for null residues
2005-05-26 amwaterhouseDOnt add Conservation graph to every residue
2005-05-26 amwaterhousetoString modified
2005-05-25 amwaterhousereset colours added
2005-05-25 amwaterhousemore clustalx bugs fixed
2005-05-25 amwaterhousegetHexString added
2005-05-25 amwaterhouseall can threshold
2005-05-25 amwaterhouseoutput to textbox
2005-05-25 amwaterhouselayout changes
2005-05-25 amwaterhousecapitals
2005-05-25 amwaterhouseformat changes
2005-05-25 amwaterhouseremove scrollpane
2005-05-25 amwaterhouseCapitalise
2005-05-25 amwaterhousec&p changed
2005-05-25 amwaterhouseuse getHexString in util
2005-05-25 amwaterhouseusercolours changed
2005-05-25 amwaterhouseoutput text to textbox
2005-05-25 amwaterhouseall colours can threshold
2005-05-25 amwaterhouseselectiongroup could be null
2005-05-25 amwaterhousesaves usercolours
2005-05-25 amwaterhouseformatforoutput never used
2005-05-25 amwaterhouseoutput values to textbox
2005-05-25 amwaterhousetoString method added
2005-05-25 amwaterhouseXML schema changes
2005-05-25 amwaterhouseusercolourscheme changed
2005-05-25 amwaterhouseformatting changes
2005-05-25 amwaterhouseall colours can threshold
2005-05-25 amwaterhouseusercolours changed
2005-05-25 amwaterhouseremove comment
2005-05-25 amwaterhousecan output details to textbox
2005-05-25 amwaterhouseusercolours added
2005-05-25 jprocteradded jalview.browser property so a linux user can...
2005-05-25 jprocterdoh - compile before commit!
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-25 jprocterImproved consistency between JPredWS and MsaWS
2005-05-25 jprocterbase class for web service clients.
2005-05-24 jproctertitle parameter for single sequence prediction.
2005-05-24 jprocterAdded more firePropertyChange calls - mainly for sequen...
2005-05-24 jprocterextended the UpdatePlaceholders to check for any new...
2005-05-24 jprocteradded PropertyChangeListeners for alignviewport.alignme...
2005-05-24 amwaterhouseremove .
2005-05-24 amwaterhouseURL getresource adds %20 for spaces. Use user.dir instead
2005-05-24 amwaterhousefilefilter might not be JalviewFileFilter
2005-05-24 jprocterformatting.
2005-05-24 amwaterhouseequalsIgnoreCase
2005-05-24 amwaterhousesetDefaultFileFormat
2005-05-24 amwaterhousereplace get with elementAt
2005-05-24 amwaterhousesetgraphics black
2005-05-24 jprocterslight changes.
2005-05-24 jprocteradded sorting alignments documentation.
2005-05-24 amwaterhousesetgraphics black
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